Browse Element(s) Details

Os.10759.1.S1_at

Description

gb:AK060249.1
DB_XREF= gi:32970267
TID=Os.10759.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-A11, full insert sequence.
FL= gb:AK060249.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g53110	11/11	magnesium transporter CorA-like family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g53060	Os.57074.1.S1_at	11/11	3	+	30381143..30383089	Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070	OsAffx.25696.1.S1_s_at	11/11	3	+	30387085..30388229	PRA1 family protein, expressed
LOC_Os03g53080	OsAffx.3595.1.S1_at	11/11	3	+	30390697..30395642	Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080	Os.5156.1.S1_s_at	10/11	3	+	30390697..30395642	Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080	Os.3924.1.S1_at	1/11	3	+	30390697..30395642	Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090	OsAffx.12125.1.S1_x_at	11/11	3	+	30399484..30400591	Leucine Rich Repeat family protein
LOC_Os03g53100	Os.47324.1.S1_s_at	11/11	3	+	30401928..30403549	Response regulator receiver domain containing protein, expressed
LOC_Os03g53110	Os.10759.1.S1_at	11/11	3	+	30404171..30409407	magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119	NA	NA	3	+	30414593..30415220	NA
LOC_Os03g53130	Os.35344.3.S1_x_at	11/11	3	+	30419042..30424995	transposon protein, putative, Mutator sub-class
LOC_Os03g53130	Os.35344.18.S1_x_at	10/11	3	+	30419042..30424995	transposon protein, putative, Mutator sub-class
LOC_Os03g53130	OsAffx.22940.5.S1_x_at	3/11	3	+	30419042..30424995	transposon protein, putative, Mutator sub-class
LOC_Os03g53140	Os.38289.1.S1_at	11/11	3	+	30426928..30432534	Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140	Os.38289.2.S1_at	11/11	3	+	30426928..30432534	Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140	Os.38289.2.S1_s_at	11/11	3	+	30426928..30432534	Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53150	Os.8585.1.S1_at	10/11	3	+	30431072..30433699	Auxin-responsive protein IAA14, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0030001	biological_process	metal ion transport
GO:0016020	cellular_component	membrane
GO:0046873	molecular_function	metal ion transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10759.1.S1_at--246--853	1	Chr03:30405474..30405498 (25 bp)	TGGACCAAATTGGTTCCCAGCATCC	LOC_Os03g53110
Os.10759.1.S1_at--770--153	1	Chr03:30405456..30405480 (25 bp)	AGCATCCCCGACTATTGGTTCAAAA	LOC_Os03g53110
Os.10759.1.S1_at--1040--441	1	Chr03:30405413..30405437 (25 bp)	GCCAGTGCCCCAACTATACATGGAA	LOC_Os03g53110
Os.10759.1.S1_at--559--975	1	Chr03:30404961..30405065 (25 bp)	TAATATCCAGCTTGACAACCACCGT	LOC_Os03g53110
Os.10759.1.S1_at--702--1055	1	Chr03:30404641..30404665 (25 bp)	TTCTTGAGTTCTGGGACCGTATGCC	LOC_Os03g53110
Os.10759.1.S1_at--60--935	1	Chr03:30404614..30404638 (25 bp)	TCGCTTTACTCATTGGTTGCCGGAA	LOC_Os03g53110
Os.10759.1.S1_at--887--329	1	Chr03:30404450..30404561 (25 bp)	CAAATGGGTGGTTCTCGTGTCAGGA	LOC_Os03g53110
Os.10759.1.S1_at--669--745	1	Chr03:30404434..30404458 (25 bp)	GTGTCAGGACTTTTCTGTGCCTTCA	LOC_Os03g53110
Os.10759.1.S1_at--893--73	1	Chr03:30404410..30404434 (25 bp)	ATGTTCGTCTCCATTGTTGCGTACG	LOC_Os03g53110
Os.10759.1.S1_at--130--717	1	Chr03:30404363..30404387 (25 bp)	GTCGTGAACCTTGCCCAAACTGTAA	LOC_Os03g53110
Os.10759.1.S1_at--1104--515	1	Chr03:30404326..30404350 (25 bp)	GCAACCTTGCGTATGATTAATCTCT	LOC_Os03g53110

Target Sequence

TGGACCAAATTGGTTCCCAGCATCCCCGACTATTGGTTCAAAAATATCAAGAGCAAGCAGAGCCAGTGCCCCAACTATAC
ATGGAAATGAAAATGATGTTGAAGAGCTAGAGATGTTGTTGGAGGCATACTTCATGCAAATTGATGGCACATTAAACAAA
TTGACAACGCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAGCTTGACAACCACCGTAATCAGTTAAT
TCAGCTAGAGCTATTCTTGAGTTCTGGGACCGTATGCCTGTCGCTTTACTCATTGGTTGCCGGAATTTTTGGTATGAACA
TTCCATACACCTGGAATGACAACCATGGATACGTATTCAAATGGGTGGTTCTCGTGTCAGGACTTTTCTGTGCCTTCATG
TTCGTCTCCATTGTTGCGTACGCACGGCACAAGGGCCTCGTCGGGTCGTGAACCTTGCCCAAACTGTAAATTTGAGCTAG
AGCAACCTTGCGTATGATTAATCTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis