Browse Element(s) Details


OsAffx.25696.1.S1_s_at

Description tigr:9631.m05200
TID=OsAffx.25696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative prenylated rab acceptor protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5307011/11PRA1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25696.1.S1_s_at--394--2591Chr03:30387752..30387776 (25 bp)
AACGTCATCGGCTCGGTCATGATCG
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--719--491Chr03:30387758..30387782 (25 bp)
ATCGGCTCGGTCATGATCGGCGCCG
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--162--9071Chr03:30387958..30387982 (25 bp)
TGCATCAATCTCTTTATCCAACACT
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--1005--6731Chr03:30387997..30388021 (25 bp)
GTTCTTGCCTTGCAAATTAGCTATG
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--193--2631Chr03:30388070..30388094 (25 bp)
AACCTAGCAGTTGATTTGATCTTTG
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--247--6651Chr03:30388118..30388142 (25 bp)
GTTGATTCTTTTGTTAGCGTGTACA
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--6--10011Chr03:30388132..30388156 (25 bp)
TAGCGTGTACAAATACTAGCTTTGC
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--101--2271Chr03:30388142..30388166 (25 bp)
AAATACTAGCTTTGCGTGTGATCAT
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--284--4891Chr03:30388150..30388174 (25 bp)
GCTTTGCGTGTGATCATACTATGAA
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--875--9891Chr03:30388166..30388190 (25 bp)
TACTATGAACATATTGAGTCGCAAC
LOC_Os03g53070
OsAffx.25696.1.S1_s_at--213--3571Chr03:30388175..30388199 (25 bp)
CATATTGAGTCGCAACTGAATTGAG
LOC_Os03g53070
Target Sequence 
AACGTCATCGGCTCGGTCATGATCGGCGCCGCCCTCGTCGCCGCGCACGCCACGCTCCGCTCCACCGACGACCTCTTCTT
GACCGAGCAGGAGGCCGCCGGCGACGGCCTGGTGGCCGCCGGCATGAGCGCCGCCGGACCAATCTTGCCCACCTACGTTC
GCATCGCTTGATCTACTCGGCTTGGTATGATGATATCCCCCCAAGATGCATCAATCTCTTTATCCAACACTCGTAGCTAA
TTGATGTTCTTGCCTTGCAAATTAGCTATGAATGATTGTGTGTGTCTCCTGGCTGGAATTTATACTGTGTAATTATCAAA
CCTAGCAGTTGATTTGATCTTTGATGATATATATGGTACGGTGTTTGTTGATTCTTTTGTTAGCGTGTACAAATACTAGC
TTTGCGTGTGATCATACTATGAACATATTGAGTCGCAACTGAATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25696.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis