Browse Element(s) Details


Os.57074.1.S1_at

Description gb:AK110867.1
DB_XREF= gi:32996076
TID=Os.57074.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E02, full insert sequence.
FL= gb:AK110867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5306011/11Cytochrome P450 71D11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed
LOC_Os03g53070OsAffx.25696.1.S1_s_at11/113+30387085..30388229PRA1 family protein, expressed
LOC_Os03g53080OsAffx.3595.1.S1_at11/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.5156.1.S1_s_at10/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53080Os.3924.1.S1_at1/113+30390697..30395642Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g53090OsAffx.12125.1.S1_x_at11/113+30399484..30400591Leucine Rich Repeat family protein
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57074.1.S1_at--490--1311Chr03:30382566..30382590 (25 bp)
AGATGGGTACACGATCCCAGCCAAA
LOC_Os03g53060
Os.57074.1.S1_at--282--4351Chr03:30382582..30382606 (25 bp)
CCAGCCAAATCACGTGTCATCGTTA
LOC_Os03g53060
Os.57074.1.S1_at--469--9431Chr03:30382619..30382643 (25 bp)
TCGGTCGAGACCCTAAGTACTAGTA
LOC_Os03g53060
Os.57074.1.S1_at--638--811Chr03:30382702..30382726 (25 bp)
ATGGGTGGCAGCTACGAGTTCATCC
LOC_Os03g53060
Os.57074.1.S1_at--738--1871Chr03:30382715..30382739 (25 bp)
ACGAGTTCATCCCATTTGGTTCTGG
LOC_Os03g53060
Os.57074.1.S1_at--426--10091Chr03:30382765..30382789 (25 bp)
TATGGCCTCGCCAGTATGGAGCTCG
LOC_Os03g53060
Os.57074.1.S1_at--745--31Chr03:30382817..30382841 (25 bp)
ATTGGTCGCTCCTGGTGGGTGTCAA
LOC_Os03g53060
Os.57074.1.S1_at--603--10011Chr03:30382956..30382980 (25 bp)
TAGCTTGTCGCTACCTTGCAATGGC
LOC_Os03g53060
Os.57074.1.S1_at--68--7131Chr03:30382990..30383014 (25 bp)
GTCTCTCAACTCATACGATTTGCCT
LOC_Os03g53060
Os.57074.1.S1_at--1075--331Chr03:30383029..30383053 (25 bp)
ATAAATCTCGCGCTCTGTAAATTGA
LOC_Os03g53060
Os.57074.1.S1_at--461--6971Chr03:30383060..30383084 (25 bp)
GTACCTGCGTACTATACAGTGTCGA
LOC_Os03g53060
Target Sequence 
AGATGGGTACACGATCCCAGCCAAATCACGTGTCATCGTTAACGTGTGGGCTATCGGTCGAGACCCTAAGTACTAGTACT
AGGAGGATGCTGAGGAGTTTAAGCCAGAGCAGTTCGACGACGATGCTATCGATTTTATGGGTGGCAGCTACGAGTTCATC
CCATTTGGTTCTGGTAGGAGGATGTGCCCTGGCTTCAACTATGGCCTCGCCAGTATGGAGCTCGTGCTCGTTGCCATGCT
CTACCACTTCGATTGGTCGCTCCTGGTGGGTGTCAAGGAGGTTGACATGGAGGAGGCGCCGGGCCTCGGCGTGCGCCGCC
GCTCGCCGCTGCTGCTCTGCGCCACCCCGTTTGTTCCGGCCGCCGTCTCCGCCGATTATTAGTTAGTACGTAGCTTGTCG
CTACCTTGCAATGGCGCTCATCACGTCTCTCAACTCATACGATTTGCCTAGTATGATCTCTAAATAAATCTCGCGCTCTG
TAAATTGATCAGCAGTACCTGCGTACTATACAGTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis