Browse Element(s) Details


OsAffx.25695.1.S1_at

Description tigr:9631.m05196
TID=OsAffx.25695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein
LOC_Os03g53050Os.27274.1.S1_at10/113+30372601..30375952WRKY DNA binding domain containing protein, expressed
LOC_Os03g53060Os.57074.1.S1_at11/113+30381143..30383089Cytochrome P450 71D11, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25695.1.S1_at--615--6311Chr03:30361050..30361074 (25 bp)
GATGACGAAGGTTGTGACCGAGCTT
LOC_Os03g53030
OsAffx.25695.1.S1_at--336--6611Chr03:30361060..30361084 (25 bp)
GTTGTGACCGAGCTTGGGCGAGGCG
LOC_Os03g53030
OsAffx.25695.1.S1_at--777--6211Chr03:30361079..30361103 (25 bp)
GAGGCGGATCCGTCACACTGAGCTT
LOC_Os03g53030
OsAffx.25695.1.S1_at--915--7971Chr03:30361084..30361108 (25 bp)
GGATCCGTCACACTGAGCTTAGGAA
LOC_Os03g53030
OsAffx.25695.1.S1_at--227--9291Chr03:30361087..30361111 (25 bp)
TCCGTCACACTGAGCTTAGGAAGGG
LOC_Os03g53030
OsAffx.25695.1.S1_at--545--1431Chr03:30361133..30361157 (25 bp)
AGAAGCAACGGCGATTGAGGAGGGC
LOC_Os03g53030
OsAffx.25695.1.S1_at--831--1331Chr03:30361178..30361202 (25 bp)
AGAGGTGGATGAGGCATGCTTCTAC
LOC_Os03g53030
OsAffx.25695.1.S1_at--609--7511Chr03:30361182..30361206 (25 bp)
GTGGATGAGGCATGCTTCTACCTTA
LOC_Os03g53030
OsAffx.25695.1.S1_at--994--8871Chr03:30361187..30361211 (25 bp)
TGAGGCATGCTTCTACCTTATGGGC
LOC_Os03g53030
OsAffx.25695.1.S1_at--760--631Chr03:30361193..30361217 (25 bp)
ATGCTTCTACCTTATGGGCCTTGAC
LOC_Os03g53030
OsAffx.25695.1.S1_at--471--3651Chr03:30361196..30361220 (25 bp)
CTTCTACCTTATGGGCCTTGACTAT
LOC_Os03g53030
Target Sequence 
GATGACGAAGGTTGTGACCGAGCTTGGGCGAGGCGGATCCGTCACACTGAGCTTAGGAAGGGGGCTCAGCTGCAGCGAAG
GGGAGAAGCAACGGCGATTGAGGAGGGCCACGAAGGGGACGGTTCGGTAGAGGTGGATGAGGCATGCTTCTACCTTATGG
GCCTTGACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis