Browse Element(s) Details


OsAffx.3593.1.S1_at

Description tigr:9631.m05192
TID=OsAffx.3593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5299011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52940NANA3+30319513..30320025hypothetical protein
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3593.1.S1_at--141--7533Chr03:3466516..3467007 (25 bp)
GTGGCTTCGGACCAGGCTTCATTCC
NONE
OsAffx.3593.1.S1_at--275--4911Chr03:30343195..30343219 (25 bp)
GCTTCATTCCCCATGACTCATGGAA
LOC_Os03g52990
OsAffx.3593.1.S1_at--74--9631Chr03:30343031..30343202 (25 bp)
TCATGGAACCCACACAATCGCAGTG
LOC_Os03g52990
OsAffx.3593.1.S1_at--538--2191Chr03:30343020..30343040 (21 bp)
ACACAATCGCAGTGCCACTAGGCAC
LOC_Os03g52990
OsAffx.3593.1.S1_at--589--4371Chr03:30343006..30343030 (25 bp)
CCACTAGGCACTGGCTGCTTGTTTT
LOC_Os03g52990
OsAffx.3593.1.S1_at--779--8331Chr03:30342994..30343018 (25 bp)
GGCTGCTTGTTTTGGATGAACTTTG
LOC_Os03g52990
OsAffx.3593.1.S1_at--1118--6311Chr03:30342980..30343004 (25 bp)
GATGAACTTTGCTAGCTTGGATTGG
LOC_Os03g52990
OsAffx.3593.1.S1_at--229--8571Chr03:30342963..30342987 (25 bp)
TGGATTGGATGCACAGGTTGGTACT
LOC_Os03g52990
OsAffx.3593.1.S1_at--245--3471Chr03:30342950..30342974 (25 bp)
CAGGTTGGTACTACCTACCTACTTG
LOC_Os03g52990
OsAffx.3593.1.S1_at--1004--9971Chr03:30342939..30342963 (25 bp)
TACCTACCTACTTGCTGTTGCTGGC
LOC_Os03g52990
OsAffx.3593.1.S1_at--207--631Chr03:30342895..30342919 (25 bp)
ATGCTGCACCTACTTGCTTTTCGTG
LOC_Os03g52990
Target Sequence 
GTGGCTTCGGACCAGGCTTCATTCCCCATGACTCATGGAACCCACACAATCGCAGTGCCACTAGGCACTGGCTGCTTGTT
TTGGATGAACTTTGCTAGCTTGGATTGGATGCACAGGTTGGTACTACCTACCTACTTGCTGTTGCTGGCATGGCATGCTG
ATGCTGGCATGCTGCACCTACTTGCTTTTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis