Browse Element(s) Details


Os.18485.1.S1_s_at

Description gb:AK068443.1
DB_XREF= gi:32978461
TID=Os.18485.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153J23, full insert sequence.
FL= gb:AK068443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5268011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18485.1.S1_s_at--981--591Chr03:30154877..30154901 (25 bp)
ATGCGGCGTCCCGACGGAATCATAC
LOC_Os03g52680
Os.18485.1.S1_s_at--231--8371Chr03:30154881..30154905 (25 bp)
GGCGTCCCGACGGAATCATACTGGT
LOC_Os03g52680
Os.18485.1.S1_s_at--503--7231Chr03:30154884..30154908 (25 bp)
GTCCCGACGGAATCATACTGGTCGA
LOC_Os03g52680
Os.18485.1.S1_s_at--65--5751Chr03:30154889..30154913 (25 bp)
GACGGAATCATACTGGTCGAGCAGA
LOC_Os03g52680
Os.18485.1.S1_s_at--458--5251Chr03:30154893..30154917 (25 bp)
GAATCATACTGGTCGAGCAGATCGC
LOC_Os03g52680
Os.18485.1.S1_s_at--119--9611Chr03:30154896..30154920 (25 bp)
TCATACTGGTCGAGCAGATCGCCGC
LOC_Os03g52680
Os.18485.1.S1_s_at--390--5011Chr03:30154996..30155020 (25 bp)
GCAGGCCCGCGGGATGGAGTGCGCG
LOC_Os03g52680
Os.18485.1.S1_s_at--865--4011Chr03:30155019..30155043 (25 bp)
CGTCGTGCTACGTGCTCGACACCTG
LOC_Os03g52680
Os.18485.1.S1_s_at--1072--10591Chr03:30155078..30155102 (25 bp)
TTCTGCCTCGCCAGGGCGCAGTGCT
LOC_Os03g52680
Os.18485.1.S1_s_at--247--4431Chr03:30155087..30155111 (25 bp)
GCCAGGGCGCAGTGCTTCGGCGACC
LOC_Os03g52680
Os.18485.1.S1_s_at--67--3811Chr03:30155322..30155346 (25 bp)
CTCCCAAATGCGGATTTGTACAGAT
LOC_Os03g52680
Target Sequence 
ATGCGGCGTCCCGACGGAATCATACTGGTCGAGCAGATCGCCGCGGCGGTCGAGGAGGGCGGCGCGTCCGCCGGCGCCGG
CGCCGCCGAGGCGGCGCGGCAGGTGTGGGGCCTGGTGGTGCAGGCCCGCGGGATGGAGTGCGCGTCGTGCTACGTGCTCG
ACACCTGCCGCGTCCGCTCCCCGGCGGGNNNNTNCNCCCACTTCTGCCTCGCCAGGGCGCAGTGCTTCGGCGACCCCCTC
GAGCTCNANCTCCGCAACGCCTGGCTCAACCGCCTCTCCGGCCGCCGGTAGCCACCGCCGNCNCCNCCGCCGCGGCGTAC
TAATGTACTAAAGCTACCGGCCTTGATGCGTCCGATTCTTGCTGTGAAGAAGAGCAAACGAAGCGTGCAGATTGCAACGG
AAGAACATATTCAGATTCTTTCTTTGTTTTCTTTCGTTCCGGTTTCTCCCAAATGCGGATTTGTACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18485.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis