Browse Element(s) Details


OsAffx.3586.1.S1_s_at

Description tigr:9631.m05153
TID=OsAffx.3586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytokinesis-specific syntaxin-related protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5265011/11Syntaxin-related protein KNOLLE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006944biological_processmembrane fusion
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3586.1.S1_s_at--429--9611Chr03:30144108..30144132 (25 bp)
TCATCTCCGAGGGACGCAGCGAGGA
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--50--2451Chr03:30144353..30144377 (25 bp)
AACAAGGAGCTACGCAAGGCCCGCG
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--1035--5171Chr03:30144396..30144420 (25 bp)
GCAAGTGGCTCTGCATCGGCATCAT
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--1045--531Chr03:30144458..30144482 (25 bp)
ATCGCCACCAGCTTCAAGAGATCGT
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--362--10511Chr03:30144470..30144494 (25 bp)
TTCAAGAGATCGTGAGCGCGCGGCC
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--355--5971Chr03:30144498..30144522 (25 bp)
GAGAAGCAGCTCATGTTGTTCAGAA
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--564--3171Chr03:30144534..30144558 (25 bp)
AATTGATCCAGACACTATGCAGTTG
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--270--651Chr03:30144550..30144574 (25 bp)
ATGCAGTTGTGTCTCAATTCCGGTT
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--755--10631Chr03:30144580..30144604 (25 bp)
TTCGCTTTCGTGTTCTCGATTCGTT
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--1073--4011Chr03:30144596..30144620 (25 bp)
CGATTCGTTCGTTAATTTCTGGCCG
LOC_Os03g52650
OsAffx.3586.1.S1_s_at--388--10311Chr03:30144611..30144635 (25 bp)
TTTCTGGCCGAATGTTTCTGTATCA
LOC_Os03g52650
Target Sequence 
TCATCTCCGAGGGACGCAGCGAGGAGCTCCTGTGCGCCGCCGTGGCGGAGCACGGCAAGGGCGCGGTGCTGGCCACGGTG
CACGAGATCCAGGACCGCCACGACGCCGCCCGCGAGGTGGAGCGCAGCCTCCTGGAGCTCCACCAGGTGTTCCTCGACAT
GGCCGTGGTGGTGGAGTCCCAGGGGGAGCAGCTCGACGACATCGAGCGCCACGTCAACAGCGCCACCACCTACGTCCAGG
GCGGCAACAAGGAGCTACGCAAGGCCCGCGAGCACCAGCGCAGCAGCCGCAAGTGGCTCTGCATCGGCATCATCATCCTG
CTGCTCCTCGTCCTCCTCGTCATCGTGCCCATCGCCACCAGCTTCAAGAGATCGTGAGCGCGCGGCCGAGGAGAAGCAGC
TCATGTTGTTCAGAAAGGGTTCGATCAATTGATCCAGACACTATGCAGTTGTGTCTCAATTCCGGTTTTTTTTTCGCTTT
CGTGTTCTCGATTCGTTCGTTAATTTCTGGCCGAATGTTTCTGTATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3586.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis