Browse Element(s) Details


Os.12036.2.S1_x_at

Description gb:NM_196469.1
DB_XREF= gi:37534297
TID=Os.12036.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12036 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative chromaffin granule ATPase II homolog (OSJNBa0045B21.2), mRNA.
PROD=putative chromaffin granule ATPase II homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g272307/11endonuclease/exonuclease/phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27200NANA10+14001256..14002210hypothetical protein
LOC_Os10g27210OsAffx.30558.1.S1_at11/1110+14002684..14003387hypothetical protein
LOC_Os10g27220Os.8958.1.S1_x_at11/1110+14010343..14014752Phospholipid-transporting ATPase 3, putative, expressed
LOC_Os10g27230Os.12036.1.S1_at11/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27230Os.12036.2.S1_x_at7/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27240OsAffx.29313.1.S1_at1/1110+14034536..14037925transposon protein, putative, Mutator sub-class
LOC_Os10g27250NANA10+14038443..14043050hypothetical protein
LOC_Os10g27260Os.2741.4.S1_x_at11/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.47463.1.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.14491.2.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260OsAffx.8513.1.S1_s_at1/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12036.2.S1_x_at--825--291Chr10:14027057..14027081 (25 bp)
ATAGCTGTTAGTGCGGACATTCCAA
LOC_Os10g27230
Os.12036.2.S1_x_at--460--7911Chr10:14027020..14027043 (24 bp)
GGATTTCAATTCAGTCCCTGGGAGT
LOC_Os10g27230
Os.12036.2.S1_x_at--829--3311Chr10:14026902..14026926 (25 bp)
CACATGGACTTCTTGCTATGGGCAA
LOC_Os10g27230
Os.12036.2.S1_x_at--1077--5211Chr10:14026836..14026860 (25 bp)
GAATTTTACGCCCTGCGAGCAAGTT
LOC_Os10g27230
Os.12036.2.S1_x_at--933--9651Chr10:14026724..14026829 (25 bp)
TCAGCTTCCTCTGGTGAGTGCATAT
LOC_Os10g27230
Os.12036.2.S1_x_at--325--1471Chr10:14026687..14026711 (25 bp)
AGAATGGTCGGTGTCGGCTATGATT
LOC_Os10g27230
Os.12036.2.S1_x_at--876--2551Chr10:14026609..14026633 (25 bp)
AACTGCACACGAGATTTCACTGGAA
LOC_Os10g27230
Os.12036.2.S1_x_at--745--10331NONE
TTTACACAGTTGTTGCAGGGTTGAC
NONE
Os.12036.2.S1_x_at--249--8611Chr10:14025453..14025477 (25 bp)
TGGTGGGCACCTGATGTCTTGGCCA
NONE
Os.12036.2.S1_x_at--642--7131Chr10:14025442..14025462 (21 bp)
GTCTTGGCCATTTATACAGGTCTAT
NONE
Os.12036.2.S1_x_at--994--10211Chr10:14025115..14025139 (25 bp)
TATTGGGACCCACTTGCAGCGAGAG
NONE
Target Sequence 
ATAGCTGTTAGTGCGGACATTCCAATGTTGGTCTGTGGGGATTTCAATTCAGTCCCTGGGAGTTCTCCACATGGACTTCT
TGCTATGGGCAAAGTTGATCAATTGCATCCAGATCTGGCCATAGATCCCCTTGGAATTTTACGCCCTGCGAGCAAGTTAA
CCCATCAGCTTCCTCTGGTGAGTGCATATTCTTCATTTGCAAGAATGGTCGGTGTCGGCTATGATTTGGAGCACCAGCGG
AGGAGGATGGACCCTGCAACAAATGAACCACTTTTCACAAACTGCACACGAGATTTCACTGGAACGGTTGATTACATATT
TTACACAGTTGTTGCAGGGTTGACAAATGGGGAGATGAATGGTTGGTGCTTTGGTGGGCACCTGATGTCTTGGCCATTTA
TACAGGTCTATTGGGACCCACTTGCAGCGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12036.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis