Browse Element(s) Details


Os.8958.1.S1_x_at

Description gb:AK066864.1
DB_XREF= gi:32976882
TID=Os.8958.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains similarity to chromaffin granule ATPase II homolog (OSJNBa0015J03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013085P21, full insert sequence.
FL= gb:AK066864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2722011/11Phospholipid-transporting ATPase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27170Os.6364.1.S1_at11/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27170Os.6364.2.S1_at1/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27180Os.7882.1.S1_at11/1110+13994330..13998999hypothetical protein
LOC_Os10g27190Os.12292.1.S1_at11/1110+13999256..1400007940S ribosomal protein S17-4, putative, expressed
LOC_Os10g27200NANA10+14001256..14002210hypothetical protein
LOC_Os10g27210OsAffx.30558.1.S1_at11/1110+14002684..14003387hypothetical protein
LOC_Os10g27220Os.8958.1.S1_x_at11/1110+14010343..14014752Phospholipid-transporting ATPase 3, putative, expressed
LOC_Os10g27230Os.12036.1.S1_at11/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27230Os.12036.2.S1_x_at7/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27240OsAffx.29313.1.S1_at1/1110+14034536..14037925transposon protein, putative, Mutator sub-class
LOC_Os10g27250NANA10+14038443..14043050hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8958.1.S1_x_at--272--10471Chr10:14010913..14010937 (25 bp)
TTCAAAGGTGGTTCTTCCCCTATGA
LOC_Os10g27220
Os.8958.1.S1_x_at--1124--7631Chr10:14010862..14010886 (25 bp)
GGGATGAACCCCACGAGTACAGCAG
LOC_Os10g27220
Os.8958.1.S1_x_at--888--5971Chr10:14010824..14010848 (25 bp)
GAGACAAGCCATCTAAGCCCAGAAG
LOC_Os10g27220
Os.8958.1.S1_x_at--404--6011Chr10:14010766..14010790 (25 bp)
GAGAGAGCTCGAAGCACACCGGGTT
LOC_Os10g27220
Os.8958.1.S1_x_at--1082--311Chr10:14010723..14010747 (25 bp)
ATACGAGTCGTTCTTTGCATCGCAG
LOC_Os10g27220
Os.8958.1.S1_x_at--257--391Chr10:14010558..14010582 (25 bp)
ATCACATGCTTTTGCTGGCAGACCA
LOC_Os10g27220
Os.8958.1.S1_x_at--424--6971Chr10:14010504..14010528 (25 bp)
GTAGCCATTTTTCGTGTTTTGTCAC
LOC_Os10g27220
Os.8958.1.S1_x_at--1050--6771Chr10:14010459..14010483 (25 bp)
GTTAGCAGAGGCCATTGATCCAGTT
LOC_Os10g27220
Os.8958.1.S1_x_at--361--6371Chr10:14010443..14010467 (25 bp)
GATCCAGTTGGCTGCAGAATTACTT
LOC_Os10g27220
Os.8958.1.S1_x_at--785--5191Chr10:14010427..14010451 (25 bp)
GAATTACTTAGGACACGCCCTTTAG
LOC_Os10g27220
Os.8958.1.S1_x_at--887--5591Chr10:14010363..14010387 (25 bp)
GAAATTCTTTCTGACGCTATTGCAA
LOC_Os10g27220
Target Sequence 
TTCAAAGGTGGTTCTTCCCCTATGACTACCAAGTAATCCAGGAGATGCACAGGGATGAACCCCACGAGTACAGCAGGATA
CAACTTCCAGAGACAAGCCATCTAAGCCCAGAAGAAGCAAGGAGCTATGCGATCTCCATGCTTCCCCGAGAGAGCTCGAA
GCACACCGGGTTCGCCNTTCGACTCCCCNGGGATACGAGTCGTTCTTTGCATCGCAGCAAGGTGTCGGTGTGCCNGCACA
AGCCGTGGGACGTAGCGCGGAGAGCTAGCATGAAGCAGCGGCAGAAAACGGGAGGATCATAACCCTAGTAGCGCCCCTAC
CTTCCTGGCCCCCCCCATTTTGTGTAAAGTTTTTGTACATCACATGCTTTTGCTGGCAGACCACAGGAGAGTGTGTATAA
GCTTGTAGCTTTGTAGCCATTTTTCGTGTTTTGTCACCGATATGTTGTGTTGGCGATGTTAGCAGAGGCCATTGATCCAG
TTGGCTGCAGAATTACTTAGGACACGCCCTTTAGTTAAAAACAAAGTTGGAAACTGGGAATGCAGTTAGTAGTGAAATTC
TTTCTGACGCTATTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8958.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis