Browse Element(s) Details


Os.6364.1.S1_at

Description gb:AK072572.1
DB_XREF= gi:32982595
TID=Os.6364.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6364 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0015J03.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127G05, full insert sequence.
FL= gb:AK072572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2717011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27140Os.26886.1.S1_x_at11/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140Os.26886.3.S1_x_at7/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140OsAffx.16244.1.S1_x_at1/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27150NANA10+13976237..13977918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27160NANA10+13981717..13982121hypothetical protein
LOC_Os10g27170Os.6364.1.S1_at11/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27170Os.6364.2.S1_at1/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27180Os.7882.1.S1_at11/1110+13994330..13998999hypothetical protein
LOC_Os10g27190Os.12292.1.S1_at11/1110+13999256..1400007940S ribosomal protein S17-4, putative, expressed
LOC_Os10g27200NANA10+14001256..14002210hypothetical protein
LOC_Os10g27210OsAffx.30558.1.S1_at11/1110+14002684..14003387hypothetical protein
LOC_Os10g27220Os.8958.1.S1_x_at11/1110+14010343..14014752Phospholipid-transporting ATPase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6364.1.S1_at--1032--7231Chr10:13991458..13991482 (25 bp)
GTCGCCGAGGCGAAAGCCCTTGACA
LOC_Os10g27170
Os.6364.1.S1_at--494--4551Chr10:13991473..13991497 (25 bp)
GCCCTTGACACCAAATAGCATTCCA
LOC_Os10g27170
Os.6364.1.S1_at--895--5171Chr10:13991501..13991525 (25 bp)
GCAAGATTTGGTTGTAGCCCTACAG
LOC_Os10g27170
Os.6364.1.S1_at--1141--8751Chr10:13991513..13991537 (25 bp)
TGTAGCCCTACAGCCCAAGGTGACA
LOC_Os10g27170
Os.6364.1.S1_at--113--7471Chr10:13991563..13991587 (25 bp)
GTGTGCTACTTGGACTGCTTTCTAA
LOC_Os10g27170
Os.6364.1.S1_at--400--2311Chr10:13991611..13991635 (25 bp)
AAAGGCAATGCTGCTTTTCTTCTCC
LOC_Os10g27170
Os.6364.1.S1_at--1123--9551Chr10:13991628..13991652 (25 bp)
TCTTCTCCTTAACTGGAGGACGATG
LOC_Os10g27170
Os.6364.1.S1_at--573--5951Chr10:13991714..13991738 (25 bp)
GAGCAAACACACCATGGCTTCCAAG
LOC_Os10g27170
Os.6364.1.S1_at--1162--1471Chr10:13991744..13991768 (25 bp)
AGCAATAAGATGTACCTTCCGAAGA
LOC_Os10g27170
Os.6364.1.S1_at--844--671Chr10:13991802..13991826 (25 bp)
ATGACACATTTGACACTCGCAAGGT
LOC_Os10g27170
Os.6364.1.S1_at--563--3431Chr10:13991871..13991895 (25 bp)
CAGATGCCAGAATTTGTACCACAAA
LOC_Os10g27170
Target Sequence 
GTCGCCGAGGCGAAAGCCCTTGACACCAAATAGCATTCCAGTTGCAAGATTTGGTTGTAGCCCTACAGCCCAAGGTGACA
ACATGGGGCTGAAGCCAAGGCAGAGGTGTGCTACTTGGACTGCTTTCTAATGTTGATATGGCATGCAAATTGCAAAGGCA
ATGCTGCTTTTCTTCTCCTTAACTGGAGGACGATGCAAAGTGTATAGTGAGTGAGGGAAACATGAGAATGTCATTCTTTG
GTTTTGTAGATGTGTAGAGCAAACACACCATGGCTTCCAAGGAACAAGCAATAAGATGTACCTTCCGAAGAAGTAATAAC
AAGTAATAAGATGTATTTTTAGATATGACACATTTGACACTCGCAAGGTGCAAGCAAAAATAGAGATTACAGGTTTTCAG
GGAGGAAAAGAAACAGATGCCAGAATTTGTACCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6364.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis