Browse Element(s) Details


OsAffx.32143.1.S1_at

Description tigr:9640.m04096
TID=OsAffx.32143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4177011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41740NANA12+25828413..25829279hypothetical protein
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32143.1.S1_at--100--7191Chr12:25844706..25844730 (25 bp)
GTCTGGAGGCTTTCTTCCCCAACTT
LOC_Os12g41770
OsAffx.32143.1.S1_at--207--10331Chr12:25844696..25844720 (25 bp)
TTTCTTCCCCAACTTGGATCTGTAG
LOC_Os12g41770
OsAffx.32143.1.S1_at--664--10651Chr12:25844692..25844716 (25 bp)
TTCCCCAACTTGGATCTGTAGTGGT
LOC_Os12g41770
OsAffx.32143.1.S1_at--917--471Chr12:25844679..25844703 (25 bp)
ATCTGTAGTGGTGGTGAGTCCCCAA
LOC_Os12g41770
OsAffx.32143.1.S1_at--425--6911Chr12:25844675..25844699 (25 bp)
GTAGTGGTGGTGAGTCCCCAAGACC
LOC_Os12g41770
OsAffx.32143.1.S1_at--891--7491Chr12:25844672..25844696 (25 bp)
GTGGTGGTGAGTCCCCAAGACCCCT
LOC_Os12g41770
OsAffx.32143.1.S1_at--32--9111Chr12:25844590..25844614 (25 bp)
TGCTCGCTCTTATGGATGCGTCGCG
LOC_Os12g41770
OsAffx.32143.1.S1_at--143--3671Chr12:25844582..25844606 (25 bp)
CTTATGGATGCGTCGCGACAGCGAG
LOC_Os12g41770
OsAffx.32143.1.S1_at--452--7371Chr12:25844530..25844554 (25 bp)
GGAGGAGGTGCAACCCCTAGGGTGG
LOC_Os12g41770
OsAffx.32143.1.S1_at--875--1331Chr12:25844469..25844493 (25 bp)
AGACAGGTTGATAAGGTGAAAGGTA
LOC_Os12g41770
OsAffx.32143.1.S1_at--664--8511Chr12:25844420..25844444 (25 bp)
TGGCAAGGAGTAGCGGCGCCTCAAC
LOC_Os12g41770
Target Sequence 
GTCTGGAGGCTTTCTTCCCCAACTTGGATCTGTAGTGGTGGTGAGTCCCCAAGACCCCTCCTCATCCCTGTGCCCTACTG
CCCTCTTCCGTCGCCTTCACTCTCAACACCACTCCATGCTCGCTCTTATGGATGCGTCGCGACAGCGAGGGAGGAGAGGA
GGCGGCGATTGGATGGGGAGGAGGTGCAACCCCTAGGGTGGGAAGAAAGGGGATGGCGAGGCGAGTGGGGGTTGGGAAGA
CAGGTTGATAAGGTGAAAGGTAATGAAGGCGTGATGGCGGAGGAGGTGGCAAGGAGTAGCGGCGCCTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis