Browse Element(s) Details


Os.54311.1.S1_at

Description gb:AK105679.1
DB_XREF= gi:32990888
TID=Os.54311.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B03, full insert sequence.
FL= gb:AK105679.1 gb:AK103271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0136011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed
LOC_Os05g01380OsAffx.4221.1.S1_x_at11/115+208835..209818Leucine Rich Repeat family protein, expressed
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54311.1.S1_at--859--10111Chr05:203436..203460 (25 bp)
TATGTGATTCATGTCGAGCTCGCCT
LOC_Os05g01360
Os.54311.1.S1_at--427--8251Chr05:203462..203486 (25 bp)
GGCACCAAGCTGTTTGTCATGTACC
LOC_Os05g01360
Os.54311.1.S1_at--640--3511Chr05:203479..203503 (25 bp)
CATGTACCCAGATGACTCAGTTGTA
LOC_Os05g01360
Os.54311.1.S1_at--16--6651Chr05:203498..203845 (25 bp)
GTTGTATGCTACAGGTGCTACCGAA
LOC_Os05g01360
Os.54311.1.S1_at--890--2891Chr05:203849..203873 (25 bp)
AAGGTGATTCTGCATCTCCACATGG
LOC_Os05g01360
Os.54311.1.S1_at--251--2371Chr05:203947..203971 (25 bp)
AAACCATGGATGTGCGTGCCTCTGT
LOC_Os05g01360
Os.54311.1.S1_at--627--3771Chr05:203966..203990 (25 bp)
CTCTGTTTCAGTGCTATGCGTCATG
LOC_Os05g01360
Os.54311.1.S1_at--223--351Chr05:204005..204029 (25 bp)
ATAATTTGGTGGTGAAGCCTCCCCT
LOC_Os05g01360
Os.54311.1.S1_at--579--8071Chr05:204041..204065 (25 bp)
GGAGCATTCAGCAGCGATACGGTCT
LOC_Os05g01360
Os.54311.1.S1_at--502--6951Chr05:204149..204173 (25 bp)
GTAGCTTCCGGTGGTCGACCAGAAA
LOC_Os05g01360
Os.54311.1.S1_at--744--2791Chr05:204311..204335 (25 bp)
AAGATGGAGAGCATTTGCCCCTGTT
LOC_Os05g01360
Target Sequence 
TATGTGATTCATGTCGAGCTCGCCTTGGCACCAAGCTGTTTGTCATGTACCCAGATGACTCAGTTGTATGCTACAGGTGC
TACCGAAATCAAGGTGATTCTGCATCTCCACATGGACGCAACTTCAGGAAAGGTGGTATATTTAAACAAAGCTGGCTCGT
TAGTAGATAACAAAGTTACAAGACAAGGAAACCATGGATGTGCGTGCCTCTGTTTCAGTGCTATGCGTCATGAAAGGAGA
GCATATATAATTTGGTGGTGAAGCCTCCCCTTTGCATTTGAAGGAGCATTCAGCAGCGATACGGTCTGAAACCATCTGAA
ATGAAGCATTATCGTTGATCATGGCGATTGGAGGGAGGCAGAGAGAGCAGTGGTCCTGGAAGGTGATACCGTAGCTTCCG
GTGGTCGACCAGAAACCATGATGTTTTTTTGTCCATAGGATTGTTGTTTTGTTTTGATAGGATAAGATGGGCTACATAAT
TTTAGGTATCGCTAGGATTTAATTTACACTGTAGACAAAACATAAGGCCTTTTGTGTCTAATAGAAGAAAGAAAGATGGA
GAGCATTTGCCCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis