Browse Element(s) Details


Os.12180.1.S1_at

Description gb:AK060306.1
DB_XREF= gi:32970324
TID=Os.12180.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A10, full insert sequence.
FL= gb:AK102829.1 gb:AK060306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0130010/11CHCH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12180.1.S1_at--46--4371Chr05:174289..174313 (25 bp)
CCACCTGCTTTTTCAGAGCTGGAAG
LOC_Os05g01300
Os.12180.1.S1_at--835--4331Chr05:174264..174288 (25 bp)
CCATCCGTGCCGTTCTGGAAGAGAG
LOC_Os05g01300
Os.12180.1.S1_at--593--5611Chr05:174160..174184 (25 bp)
GACAAGGAGTTCAAGCTGCCGTACC
LOC_Os05g01300
Os.12180.1.S1_at--35--971Chr05:174114..174138 (25 bp)
AGGAGAGGTCAAACTGCCGCCAGTG
LOC_Os05g01300
Os.12180.1.S1_at--669--4531Chr05:174099..174123 (25 bp)
GCCGCCAGTGTTACGTGAGCAATGC
LOC_Os05g01300
Os.12180.1.S1_at--622--2111Chr05:174074..174098 (25 bp)
ACAGGACCCACTCAAGTGTGCTGAG
LOC_Os05g01300
Os.12180.1.S1_at--1025--191Chr05:174038..174062 (25 bp)
ATTTGAAGCATGTGTTCGCCTGGCG
LOC_Os05g01300
Os.12180.1.S1_at--187--2331Chr05:173995..174019 (25 bp)
AAAGTTGCTCAGTAGCCCTGGAAGA
LOC_Os05g01300
Os.12180.1.S1_at--833--91Chr05:173877..173901 (25 bp)
ATTCTAATGGCATCGCACCAGGCTA
LOC_Os05g01300
Os.12180.1.S1_at--921--3891Chr05:173779..173803 (25 bp)
CTGGGTGTTTTTCTCTGATTGGTAT
LOC_Os05g01300
Os.12180.1.S1_at--252--3071Chr05:173728..173752 (25 bp)
AATCTATGCTGTTGCCATTTGCGTT
NONE
Target Sequence 
CCACCTGCTTTTTCAGAGCTGGAAGCCATCCGTGCCGTTCTGGAAGAGAGCGAAAAGGTTCAGGAGAAGCTGGATAAGCA
GCATGCTGGGATGCGTGATGAACTCATCAAGAAATCAAAAGACCTGCGTGACAAGGAGTTCAAGCTGCCGTACCAAAACC
CCACGCCATGCACTGAGGAGAGGTCAAACTGCCGCCAGTGTTACGTGAGCAATGCACAGGACCCACTCAAGTGTGCTGAG
GCAGTCAAGAGATTTGAAGCATGTGTTCGCCTGGCGAGGCAAAGGGGCAACACAAAAGTTGCTCAGTAGCCCTGGAAGAT
TTGTGATGAGGAAAGAACTGATATACGATTTTGCTTTGCTGTGATGATTTAATAACCTGGAATTTTGATGAGACCTAAGA
CATATTTCTACAATTCTAATGGCATCGCACCAGGCTAGGTGAGGAAGCTACAGATCCTTGAGTTTAGGGATTCTGTATTG
CAAATATTGGGTAAAAATGAAACATGAATTCTGGGTGTTTTTCTCTGATTGGTATCATGAGTGAAAGCGTTATCCATACA
TAATCTATGCTGTTGCCATTTGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis