Browse Element(s) Details


Os.8540.1.S1_at

Description gb:AK066339.1
DB_XREF= gi:32976357
TID=Os.8540.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013062F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013062F19, full insert sequence.
FL= gb:AK066339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g012902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8540.1.S1_at--789--2051Chr05:171599..171623 (25 bp)
ACTTCGTCGAGTTCGGCAACCTGCA
LOC_Os05g01290
Os.8540.1.S1_at--947--10811Chr05:171683..171707 (25 bp)
TTGTCATCGTCATCGGAGTACACAT
LOC_Os05g01290
Os.8540.1.S1_at--269--6091Chr05:171698..171722 (25 bp)
GAGTACACATCACCACCGATTAATT
NONE
Os.8540.1.S1_at--929--10051Chr05:171736..171760 (25 bp)
TAGTTTCTTCATTTCTGCAGTTCGT
NONE
Os.8540.1.S1_at--183--9171Chr05:171767..171791 (25 bp)
TGCCCTCTGTAATCTCTATCTTCTT
NONE
Os.8540.1.S1_at--150--9271Chr05:171819..171843 (25 bp)
TCCTCCATATATATCCTACCTCATA
NONE
Os.8540.1.S1_at--974--2111Chr05:171859..171883 (25 bp)
ACATGGTGCTTCCTTGATGTTCAGC
NONE
Os.8540.1.S1_at--158--1251Chr05:171957..171981 (25 bp)
AGTTGGCACTGCTATCAAATTCAGA
NONE
Os.8540.1.S1_at--318--3151Chr05:171974..171998 (25 bp)
AATTCAGATCTCATAGCTAGCTTAA
NONE
Os.8540.1.S1_at--380--3131Chr05:172028..172052 (25 bp)
AATTTTCAGCCTCTACTCTTATTAC
NONE
Os.8540.1.S1_at--642--1671Chr05:172035..172059 (25 bp)
AGCCTCTACTCTTATTACTCATGTT
NONE
Target Sequence 
ACTTCGTCGAGTTCGGCAACCTGCACACCAGCGCCATGTCCATCGTCGTCCACTCCATCATCTACTTCGCCCTCATCACC
CTCTTTGTCATCGTCATCGGAGTACACATCACCACCGATTAATTTTTACTTCTTCTTTAGTTTCTTCATTTCTGCAGTTC
GTCTGCCCTGCCCTCTGTAATCTCTATCTTCTTCTTTCTTGCTCATCCTGTCTTCTCCCCTCCTCCATATATATCCTACC
TCATATTAATTCTACTATCTACATGGTGCTTCCTTGATGTTCAGCACATCAAACCATGCATAAACCAAGACTGTTTTAAA
TTATTACTGTTTTCTACTAGTATTATATATGCATGGGCAGTTGGCACTGCTATCAAATTCAGATCTCATAGCTAGCTTAA
TTGAGCAGTTTGGCACATATATTCTCCCNAAATTTTCAGCCTCTACTCTTATTACTCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis