Browse Element(s) Details


Os.40035.1.A1_x_at

Description gb:CF334314
DB_XREF= gi:33816962
DB_XREF=JMT--03-I24.g1
CLONE=JMT--03-I24
TID=Os.40035.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40035 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_196816.1 (A.thaliana) peptidylprolyl isomerase-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g012701/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005624cellular_componentmembrane fraction
GO:0005829cellular_componentcytosol
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40035.1.A1_x_at--29--8731NONE
TGTTTGGGCAGGTTATTTAAGGCAT
NONE
Os.40035.1.A1_x_at--514--7851NONE
GGTTATTTAAGGCATGGACATCGTT
NONE
Os.40035.1.A1_x_at--79--2931NONE
AAGGCATGGACATCGTTAAGGTGAT
NONE
Os.40035.1.A1_x_at--409--5671NONE
GACATCGTTAAGGTGATTGAATCGC
NONE
Os.40035.1.A1_x_at--692--6591NONE
GATTGAATCGCAGGAGACTGACAAA
NONE
Os.40035.1.A1_x_at--993--8971NONE
TGAATCGCAGGAGACTGACAAAGGG
NONE
Os.40035.1.A1_x_at--1079--2431NONE
AAAAGGTGGTCATCAGTGAGTGTGG
NONE
Os.40035.1.A1_x_at--497--9291Chr05:166269..166293 (25 bp)
TCCCCCGGAGACTTTGCTGTTTTTG
LOC_Os05g01270
Os.40035.1.A1_x_at--447--8831NONE
TGAGTTGAGGCCAAGATTTTTAAGT
NONE
Os.40035.1.A1_x_at--564--5951NONE
GAGAAGAATCCTTTATTGTTCGGGT
NONE
Os.40035.1.A1_x_at--829--4291NONE
GAATCCTTTATTGTTCGGGTGGAAT
NONE
Target Sequence 
TGTTTGGGCAGGTTATTTAAGGCATGGACATCGTTAAGGTGATTGAATCGCAGGAGACTGACAAAGGGGACCGCCCCAAA
AAAAAGGTGGTCATCAGTGAGTGTGGGGAGNTTCCAGTGGTTTAATAGGNGCCANAGGGGTAATTTTTTTCCCCCGGAGA
CTTTGCTGTTTTTGGTTTCATAGTAANCTGTGAACTTATNGCATGTTTTCCGNGCAGTCANAGATCATGNTGAGTTGAGG
CCAAGATTTTTAAGTTGAGAAGAATCCTTTATTGTTCGGGTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40035.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis