Browse Element(s) Details


Os.2486.1.S1_at

Description gb:AK065749.1
DB_XREF= gi:32975767
TID=Os.2486.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042C01, full insert sequence.
FL= gb:AK104101.1 gb:AK065749.1 gb:AK061764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0125011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2486.1.S1_at--122--2751Chr05:154124..154148 (25 bp)
AAGAAGCTACAATGTCCCTGATGAC
LOC_Os05g01250
Os.2486.1.S1_at--323--2671Chr05:154581..154605 (25 bp)
AAGCCGACATGGACTTTGAATCAAA
LOC_Os05g01250
Os.2486.1.S1_at--186--8991Chr05:154597..154621 (25 bp)
TGAATCAAATTCAGTCCCCTCGTAC
LOC_Os05g01250
Os.2486.1.S1_at--899--6571Chr05:154649..154673 (25 bp)
GATTCTGAGCTTAACTTGCCTGCTG
LOC_Os05g01250
Os.2486.1.S1_at--45--10851Chr05:155327..155351 (25 bp)
TTGGGATTGCCGACAGTGCCACAAG
LOC_Os05g01250
Os.2486.1.S1_at--1079--7271Chr05:155342..155366 (25 bp)
GTGCCACAAGCATCGATCCGTAGTT
LOC_Os05g01250
Os.2486.1.S1_at--326--2251Chr05:155410..155434 (25 bp)
AAATTCAGTGTATCTTTGCTCATAT
LOC_Os05g01250
Os.2486.1.S1_at--938--4811Chr05:155427..155451 (25 bp)
GCTCATATACTACTGCAATTTGTTA
LOC_Os05g01250
Os.2486.1.S1_at--944--3751Chr05:155469..155493 (25 bp)
CTCATTGTTTTGTTTAGGGTCTATA
LOC_Os05g01250
Os.2486.1.S1_at--144--1151Chr05:155562..155586 (25 bp)
AGTCCTTATTCTGTGTTGGTGATGA
LOC_Os05g01250
Os.2486.1.S1_at--192--9171Chr05:155589..155613 (25 bp)
TGCCCTTGCATCTCGGAACAATGGT
LOC_Os05g01250
Target Sequence 
AAGAAGCTACAATGTCCCTGATGACATTGACGAGGAAGAACTTATGGGGGAGCTTGATGCTTTGGAAGCCGACATGGACT
TTGAATCAAATTCAGTCCCCTCGTACCTTCAACCAGATAAGGAATCAGATCTAGATTCTGAGCTTAACTTGCCTGCTGCA
CCAACGGGTCACACACCCGCCCCACCAAACCGGCAGCAGGAGGACGAATTGGGATTGCCGACAGTGCCACAAGCATCGAT
CCGTAGTTGATTGGATTCGTTTTGTAAAAACATAATGTCGTATGCAATAACAAATTCAGTGTATCTTTGCTCATATACTA
CTGCAATTTGTTAAGATTGGAAATAGCTTTCTCATTGTTTTGTTTAGGGTCTATATGTAAGAGCATTTGTTACTTTTTGA
AGTACAGTGTAAATTTAATTGGCTGCTGGGGCATACATATATAAGTCCTTATTCTGTGTTGGTGATGAGCTGCCCTTGCA
TCTCGGAACAATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis