Browse Element(s) Details


Os.49723.1.S1_at

Description gb:AK101136.1
DB_XREF= gi:32986345
TID=Os.49723.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026H11, full insert sequence.
FL= gb:AK101136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0123011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01150OsAffx.18122.1.S1_x_at1/115+107645..110905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g01160NANA5+112308..113183retrotransposon protein, putative, LINE subclass
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed
LOC_Os05g01190Os.54657.1.S1_at11/115+121880..125658hAT family dimerisation domain containing protein, expressed
LOC_Os05g01200OsAffx.26675.1.S1_at11/115+126326..127383exonuclease family protein, putative, expressed
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49723.1.S1_at--992--3851Chr05:137725..137749 (25 bp)
CTGAGCGGCGGAACTCCTGTGAAGC
LOC_Os05g01230
Os.49723.1.S1_at--470--8851Chr05:137859..137883 (25 bp)
TGATGGTAGCCCTGCGACAAGGACC
LOC_Os05g01230
Os.49723.1.S1_at--1124--5591Chr05:137874..137898 (25 bp)
GACAAGGACCAGGAGGGCTACCCGC
LOC_Os05g01230
Os.49723.1.S1_at--792--9951Chr05:137892..137916 (25 bp)
TACCCGCGCTGAAGCCTGAATGAAG
LOC_Os05g01230
Os.49723.1.S1_at--681--7691Chr05:137979..138003 (25 bp)
GGGTCGTATTCGTATATTCTATCTA
LOC_Os05g01230
Os.49723.1.S1_at--1011--10691Chr05:138022..138046 (25 bp)
TTGCCTTGTGCTGTTGCTCTAGCTC
LOC_Os05g01230
Os.49723.1.S1_at--1060--4811Chr05:138037..138061 (25 bp)
GCTCTAGCTCTTTTGATCCACAAGG
LOC_Os05g01230
Os.49723.1.S1_at--509--2551Chr05:138072..138096 (25 bp)
AACTGCCGCGGTGTGCTTTTGGGAT
LOC_Os05g01230
Os.49723.1.S1_at--158--10171Chr05:138136..138160 (25 bp)
TATACAGTGGTTGCTTTACCTTTAC
LOC_Os05g01230
Os.49723.1.S1_at--233--6291Chr05:138179..138203 (25 bp)
GATGTTCCTCATACAACTTTCCAAT
LOC_Os05g01230
Os.49723.1.S1_at--554--1951Chr05:138211..138235 (25 bp)
ACTGGCATGGTTTGCCTTGGATTCT
LOC_Os05g01230
Target Sequence 
CTGAGCGGCGGAACTCCTGTGAAGCGCAACAGCAGGAAGAGTAGTGAGGTTGATGCCAAAGGCGGTGGCGGTAGTCCTGT
TGTGAGCAGCCCTCGCAGGGTGACGAGGAGCAATGCCAAGGCTAGCGGTGAAGCTGATGGTAGCCCTGCGACAAGGACCA
GGAGGGCTACCCGCGCTGAAGCCTGAATGAAGATGGATGAATGGCTGGTTGGCTGGCTGTAGAGGGGAAGAAGACGGAGA
CTGGAGCCATTTTGGGGTCGTATTCGTATATTCTATCTATTTAGTAATTTAGGCCGTTTGCCTTGTGCTGTTGCTCTAGC
TCTTTTGATCCACAAGGGGTGAACTGGAACTGCCGCGGTGTGCTTTTGGGATGGCTTGGGTTGGGTTGTTAGTTGAAGGA
ATATATACTTATATACAGTGGTTGCTTTACCTTTACCTGTATGGATGTATGATGGATGTTCCTCATACAACTTTCCAATT
CCAATTACTGGCATGGTTTGCCTTGGATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis