Browse Element(s) Details


Os.20502.1.S1_x_at

Description gb:AK073341.1
DB_XREF= gi:32983364
TID=Os.20502.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030P10, full insert sequence.
FL= gb:AK073341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0121011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01150OsAffx.18122.1.S1_x_at1/115+107645..110905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g01160NANA5+112308..113183retrotransposon protein, putative, LINE subclass
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed
LOC_Os05g01190Os.54657.1.S1_at11/115+121880..125658hAT family dimerisation domain containing protein, expressed
LOC_Os05g01200OsAffx.26675.1.S1_at11/115+126326..127383exonuclease family protein, putative, expressed
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20502.1.S1_x_at--131--3611Chr05:128527..128551 (25 bp)
CATTGTCCATGATCCACAGTTTGGT
LOC_Os05g01210
Os.20502.1.S1_x_at--320--4871Chr05:128317..128341 (25 bp)
GCTATCCTGCCACCAAAACTTGTAA
LOC_Os05g01210
Os.20502.1.S1_x_at--561--2391Chr05:128302..128326 (25 bp)
AAACTTGTAAATTTTCCGTGTGCTG
LOC_Os05g01210
Os.20502.1.S1_x_at--921--8711Chr05:128241..128265 (25 bp)
TGTCGAGTTGAGTTGGCATTGCCCT
LOC_Os05g01210
Os.20502.1.S1_x_at--464--9171Chr05:128222..128246 (25 bp)
TGCCCTTCTGATTGTGGCTTTTGAA
LOC_Os05g01210
Os.20502.1.S1_x_at--1023--7531Chr05:128209..128233 (25 bp)
GTGGCTTTTGAAACTGCACAATCGC
LOC_Os05g01210
Os.20502.1.S1_x_at--298--4131Chr05:128187..128211 (25 bp)
CGCAGAGAGCTTTCGGATGTACATA
LOC_Os05g01210
Os.20502.1.S1_x_at--1082--6251Chr05:128172..128196 (25 bp)
GATGTACATAAATGAGGTCTCCCGT
LOC_Os05g01210
Os.20502.1.S1_x_at--312--1571Chr05:128143..128167 (25 bp)
AGCTATATCATCTTGTGTGTGTACA
LOC_Os05g01210
Os.20502.1.S1_x_at--967--9811Chr05:128110..128134 (25 bp)
TAACATCCAGGTCCATGGTGTCGGT
LOC_Os05g01210
Os.20502.1.S1_x_at--656--2251Chr05:128077..128101 (25 bp)
AAATATGTGTCGGTCAGTCTGTAAA
LOC_Os05g01210
Target Sequence 
CATTGTCCATGATCCACAGTTTGGTAAAAACATACCTTCCTTTTCTCCTTTAGGGAGTTCTTTCGGCAAAAAGTCTGCTG
GAAGAGCTGAAGTAGGTTCTNCCATCTTGCGGGNCAAGCAGCCCAAAAGTTAGAATTGAAGGTTTTGCTTGTGGGAACAA
GGAGCCCCACTGTGNCAGTCACCTTTGCCTGAGCATTCTNCATTGACCCTAACGCTATCCTGCCACCAAAACTTGTAAAT
TTTCCGTGTGCTGNAGGAGGGCATAAATTAGTTTATTTTNGGCTTCTTTTTGTCGAGTTGAGTTGGCATTGCCCTTCTGA
TTGTGGCTTTTGAAACTGCACAATCGCAGAGAGCTTTCGGATGTACATAAATGAGGTCTCCCGTCNGTAGCTATATCATC
TTGTGTGTGTACANAANGTAGTAACATCCAGGTCCATGGTGTCGGTCAGTCTGNAAATATGTGTCGGTCAGTCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20502.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis