Browse Element(s) Details


Os.54657.1.S1_at

Description gb:AK106387.1
DB_XREF= gi:32991596
TID=Os.54657.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E07, full insert sequence.
FL= gb:AK106387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0119011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01150OsAffx.18122.1.S1_x_at1/115+107645..110905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g01160NANA5+112308..113183retrotransposon protein, putative, LINE subclass
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed
LOC_Os05g01190Os.54657.1.S1_at11/115+121880..125658hAT family dimerisation domain containing protein, expressed
LOC_Os05g01200OsAffx.26675.1.S1_at11/115+126326..127383exonuclease family protein, putative, expressed
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54657.1.S1_at--400--6151Chr05:124867..124891 (25 bp)
GAGGTTTCCAACTCTGCAGATGTTA
LOC_Os05g01190
Os.54657.1.S1_at--936--2071Chr05:124899..124923 (25 bp)
ACATTTTAGCGGTTCCTGTCTCAAG
LOC_Os05g01190
Os.54657.1.S1_at--412--9011Chr05:124933..124957 (25 bp)
TGAATCGGCGTTTAGCATTGCTGGA
LOC_Os05g01190
Os.54657.1.S1_at--187--2891Chr05:124957..124981 (25 bp)
AAGGGTTTTGAGTCCACAGCGTAGC
LOC_Os05g01190
Os.54657.1.S1_at--1000--2171Chr05:124997..125021 (25 bp)
ACACTGGAGGCCTTGATGTGCTCAC
LOC_Os05g01190
Os.54657.1.S1_at--955--9031Chr05:125146..125170 (25 bp)
TGCAGGATCGTCAGGGCTCTTGAGC
LOC_Os05g01190
Os.54657.1.S1_at--716--4451Chr05:125172..125196 (25 bp)
GCCTCACTTGCCTGGAAGATGCTGA
LOC_Os05g01190
Os.54657.1.S1_at--1160--8091Chr05:125324..125348 (25 bp)
GGACGCCTGTTGATTGTTTGCTACA
LOC_Os05g01190
Os.54657.1.S1_at--1129--611Chr05:125354..125378 (25 bp)
ATGCTGAAGTTGATCTCGCACATTC
LOC_Os05g01190
Os.54657.1.S1_at--596--1651Chr05:125393..125417 (25 bp)
AGCGCTGAGATCTGGGTTAGCTTTT
LOC_Os05g01190
Os.54657.1.S1_at--901--3151Chr05:125542..125566 (25 bp)
AATTCTGTGCGTAAGCTTGCTGTTG
LOC_Os05g01190
Target Sequence 
GAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTA
GCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAANCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGAT
TGGCTTCNTGCAGAAAACAGAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAAN
TACAAAGGAGTGAAGTTTGGACGCCTGTTGATTGTTTGCTACAAATATATGCTGAAGTTGATCTCGCACATTCACCAGCT
GNATTAAAGCGCTGAGATCTGGGTTAGCTTTTTTTTTGGTTTATCTCAAGAGTATTGTGGGTAAGGAAGGTGGTGTGTAT
GTTGGAACTGTGAGGAGTCTACTAAAATGAAGAAAGCATTCAGTTGATCATTCTTTTCAGGAAAGATTAGTTGCAAAATT
CTGTGCGTAAGCTTGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis