Browse Element(s) Details


Os.53081.1.S1_at

Description gb:AK070736.1
DB_XREF= gi:32980759
TID=Os.53081.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062D21, full insert sequence.
FL= gb:AK070736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0118011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01140Os.14938.1.S1_at11/115+94475..96310SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os05g01150OsAffx.18122.1.S1_x_at1/115+107645..110905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g01160NANA5+112308..113183retrotransposon protein, putative, LINE subclass
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed
LOC_Os05g01190Os.54657.1.S1_at11/115+121880..125658hAT family dimerisation domain containing protein, expressed
LOC_Os05g01200OsAffx.26675.1.S1_at11/115+126326..127383exonuclease family protein, putative, expressed
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53081.1.S1_at--670--6551Chr05:119353..119377 (25 bp)
GATTACATGGATTCTCAGGAGTCTA
LOC_Os05g01180
Os.53081.1.S1_at--171--9791Chr05:119225..119249 (25 bp)
TAAGAGGTCCCAAGAGATGGCAATG
LOC_Os05g01180
Os.53081.1.S1_at--769--311Chr05:119169..119193 (25 bp)
ATAAAAATTCCCTCCTTCATACATG
LOC_Os05g01180
Os.53081.1.S1_at--327--771Chr05:119138..119162 (25 bp)
ATGTCTCTTTAATTGATATTGCTAG
LOC_Os05g01180
Os.53081.1.S1_at--477--7831Chr05:119104..119128 (25 bp)
GGTCAATCTGGGTTGTGCTGTTGAT
LOC_Os05g01180
Os.53081.1.S1_at--576--7311Chr05:119090..119114 (25 bp)
GTGCTGTTGATGATATAGCCTCTAA
LOC_Os05g01180
Os.53081.1.S1_at--79--6031Chr05:119043..119067 (25 bp)
GAGATGGCCAGAATTAACCTCTTTC
LOC_Os05g01180
Os.53081.1.S1_at--344--3111Chr05:119004..119028 (25 bp)
AATTCTGAAGGTCAACATTGTCTTG
LOC_Os05g01180
Os.53081.1.S1_at--396--3271Chr05:118992..119016 (25 bp)
CAACATTGTCTTGATTCCTTTGAGA
LOC_Os05g01180
Os.53081.1.S1_at--809--5931Chr05:118893..118917 (25 bp)
GAGCATGTGCTTAAACAGATTCAAT
LOC_Os05g01180
Os.53081.1.S1_at--795--2131Chr05:118879..118903 (25 bp)
ACAGATTCAATCTTCAGCTAGAAAA
LOC_Os05g01180
Target Sequence 
GATTACATGGATTCTCAGGAGTCTAAGGGAAGTTTTGCTAAGAGGTTGGGGATTAATCTAACTGAAGAAGCTCTTGGAAG
TCAAGATGAAGAGATGAGGAGAAGCAAGAGACTGAAAGACAAGGAAGATAAGAGGTCCCAAGAGATGGCAATGGAAAGGA
AAGAAGCACAAAATGCTTTCATCAATAAAAATTCCCTCCTTCATACATGAATCAAATGTCTCTTTAATTGATATTGCTAG
TGTTTTAGGGGTCAATCTGGGTTGTGCTGTTGATGATATAGCCTCTAATATTAATCTGATTAGAGACTTAGAGATGGCCA
GAATTAACCTCTTTCTGAAAGAGGGAACAAATTCTGAAGGTCAACATTGTCTTGATTCCTTTGAGAATTCAAATCCTGAT
TTAAATGTTTTTTCTGATGATTTGGATTCTGAAACTAATGATGAGGATTTTAAAGAAATTGAGCATGTGCTTAAACAGAT
TCAATCTTCAGCTAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis