Browse Element(s) Details


OsAffx.26675.1.S1_at

Description tigr:9633.m00023
TID=OsAffx.26675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=exonuclease, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0120011/11exonuclease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01150OsAffx.18122.1.S1_x_at1/115+107645..110905transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g01160NANA5+112308..113183retrotransposon protein, putative, LINE subclass
LOC_Os05g01170NANA5+115204..118540retrotransposon protein, putative, unclassified, expressed
LOC_Os05g01180Os.53081.1.S1_at11/115+118825..121172Zinc knuckle family protein, expressed
LOC_Os05g01190Os.54657.1.S1_at11/115+121880..125658hAT family dimerisation domain containing protein, expressed
LOC_Os05g01200OsAffx.26675.1.S1_at11/115+126326..127383exonuclease family protein, putative, expressed
LOC_Os05g01210Os.20502.1.S1_x_at11/115+127993..130076expressed protein
LOC_Os05g01210OsAffx.12568.1.S1_at1/115+127993..130076expressed protein
LOC_Os05g01230Os.49723.1.S1_at11/115+133407..138235zinc finger family protein, putative, expressed
LOC_Os05g01240Os.15821.1.A1_x_at11/115+138741..145931AML6, putative, expressed
LOC_Os05g01240Os.15821.3.A1_at10/115+138741..145931AML6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26675.1.S1_at--268--3951Chr05:127065..127089 (25 bp)
CGGCATCGGCAAGCAGAGCCACAGG
LOC_Os05g01200
OsAffx.26675.1.S1_at--936--1511Chr05:127076..127100 (25 bp)
AGCAGAGCCACAGGAGCCTTGACGA
LOC_Os05g01200
OsAffx.26675.1.S1_at--488--971Chr05:127087..127111 (25 bp)
AGGAGCCTTGACGACGCCCGCATGA
LOC_Os05g01200
OsAffx.26675.1.S1_at--422--1831Chr05:127100..127124 (25 bp)
ACGCCCGCATGAACCTGGAGGTGCT
LOC_Os05g01200
OsAffx.26675.1.S1_at--905--8551Chr05:127115..127139 (25 bp)
TGGAGGTGCTCAAGCGCTGCGCCAC
LOC_Os05g01200
OsAffx.26675.1.S1_at--945--4151Chr05:127191..127215 (25 bp)
CGCCGGATCCATCACCAGGAAGAGG
LOC_Os05g01200
OsAffx.26675.1.S1_at--334--1491Chr05:127216..127240 (25 bp)
AGCAACCACCAAGAGGAGCCATCGT
LOC_Os05g01200
OsAffx.26675.1.S1_at--975--4011Chr05:127238..127262 (25 bp)
CGTCGTCGTCTCTTGTCAATGTGAC
LOC_Os05g01200
OsAffx.26675.1.S1_at--1072--7151Chr05:127245..127269 (25 bp)
GTCTCTTGTCAATGTGACGCCTAGT
LOC_Os05g01200
OsAffx.26675.1.S1_at--325--5071Chr05:127289..127313 (25 bp)
GCAGCGGCGGCAAAATCAGGCCCAA
LOC_Os05g01200
OsAffx.26675.1.S1_at--111--2451Chr05:127300..127324 (25 bp)
AAAATCAGGCCCAAGGCAGCAACCA
LOC_Os05g01200
Target Sequence 
CGGCATCGGCAAGCAGAGCCACAGGAGCCTTGACGACGCCCGCATGAACCTGGAGGTGCTCAAGCGCTGCGCCACCCTCC
TGCTGCTCGAGTCCACCCTTCCCCCGGGCATGCTGCACTCCTCCGCCGCCGGATCCATCACCAGGAAGAGGAGCAACCAC
CAAGAGGAGCCATCGTCGTCGTCTCTTGTCAATGTGACGCCTAGTAAAAGGAAGCAGCGGCAGGGCAGCGGCGGCAAAAT
CAGGCCCAAGGCAGCAACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis