Browse Element(s) Details


Os.5620.1.S1_at

Description gb:AK065617.1
DB_XREF= gi:32975635
TID=Os.5620.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.30 (P0439B06.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029F11, full insert sequence.
FL= gb:AK065617.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0132011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5620.1.S1_at--1090--3451Chr05:180472..180496 (25 bp)
CAGGAAGGAACACAAGCACAGGAAC
LOC_Os05g01320
Os.5620.1.S1_at--131--6051Chr05:180281..180305 (25 bp)
GAGATAACAGTAGCAGTGATGTGAT
LOC_Os05g01320
Os.5620.1.S1_at--978--8331Chr05:180234..180258 (25 bp)
GGCTGGGCTCGTTTGTTCTTGAGGA
LOC_Os05g01320
Os.5620.1.S1_at--626--6271Chr05:180109..180133 (25 bp)
GATGTCGAGATTTTTAACTTAAAAT
LOC_Os05g01320
Os.5620.1.S1_at--575--10471Chr05:180091..180115 (25 bp)
TTAAAATGCCAAGAGTACTAGTACT
LOC_Os05g01320
Os.5620.1.S1_at--1115--10411Chr05:180053..180077 (25 bp)
TTATGAAGACGAGTCAACTGGTTGG
LOC_Os05g01320
Os.5620.1.S1_at--873--3892Chr05:180036..180060 (25 bp)
CTGGTTGGTTGCCTTTGTTACTAGT
LOC_Os05g01320
Os.5620.1.S1_at--107--8572Chr05:180031..180055 (25 bp)
TGGTTGCCTTTGTTACTAGTATCTT
LOC_Os05g01320
Os.5620.1.S1_at--773--4452Chr05:180026..180050 (25 bp)
GCCTTTGTTACTAGTATCTTGTATG
LOC_Os05g01320
Os.5620.1.S1_at--978--6891Chr05:180013..180037 (25 bp)
GTATCTTGTATGACATATGCCGATA
LOC_Os05g01320
Os.5620.1.S1_at--604--5671Chr05:180002..180026 (25 bp)
GACATATGCCGATATTTCATCCAGC
LOC_Os05g01320
Target Sequence 
CAGGAAGGAACACAAGCACAGGAACAAACACAAGCACGGNCAGATTTGGTGGNCTGAGGCTNCCTGGACTTGGGTTTCTT
GCAAGTTCGACGAGTTAGTTGNTGAGGTGTTTTTATTTAAGTTAAAAGATGGTGCTGCCAGGAGCTCTCCATTGCTTTGC
TTGTAGTTTTAGGTTGTACAGTAGGAGAGAAGAGATAACAGTAGCAGTGATGTGATGGAACAACACATATACGTGCGGGG
CTGGGCTCGTTTGTTCTTGAGGAGNCCAAATTTTTGTAGAAAAAANGAGANGAAAACATGTGCACCTATGTATCTATCTA
TCTATAGCCATGAATGCATCATCCAGGGCAACACCTTGGTCTTTGATGTCGAGATTTTTAACTTAAAATGCCAAGAGTAC
TAGTACTTGGTTAATTAATTTTATGAAGACGAGTCAACTGGTTGGTTGCCTTTGTTACTAGTATCTTGTATGACATATGC
CGATATTTCATCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis