Browse Element(s) Details


Os.55730.1.S1_at

Description gb:AK108676.1
DB_XREF= gi:32993885
TID=Os.55730.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A03, full insert sequence.
FL= gb:AK108676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0144411/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os05g01444OsAffx.26677.1.S1_x_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01444Os.55730.1.S1_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01450Os.11420.1.S1_at11/115+238114..240333Eukaryotic translation initiation factor 3 subunit 5, putative, expressed
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009411biological_processresponse to UV
GO:0009650biological_processUV protection
GO:0042221biological_processresponse to chemical stimulus
GO:0042493biological_processresponse to drug
GO:0009507cellular_componentchloroplast
GO:0000166molecular_functionnucleotide binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004857molecular_functionenzyme inhibitor activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55730.1.S1_at--1090--5811Chr05:236311..236335 (25 bp)
GATCCAGACCTTGAAACTGTAACCA
LOC_Os05g01444
Os.55730.1.S1_at--818--5831Chr05:236317..236341 (25 bp)
GACCTTGAAACTGTAACCACTACTG
LOC_Os05g01444
Os.55730.1.S1_at--56--5551Chr05:236323..236347 (25 bp)
GAAACTGTAACCACTACTGTACTGT
LOC_Os05g01444
Os.55730.1.S1_at--1097--7051Chr05:236329..236353 (25 bp)
GTAACCACTACTGTACTGTAGTAAT
LOC_Os05g01444
Os.55730.1.S1_at--1001--6991Chr05:236341..236365 (25 bp)
GTACTGTAGTAATAATCACTGAGCA
LOC_Os05g01444
Os.55730.1.S1_at--44--9751Chr05:236353..236377 (25 bp)
TAATCACTGAGCAATACCAAAAACT
LOC_Os05g01444
Os.55730.1.S1_at--750--5931Chr05:236361..236385 (25 bp)
GAGCAATACCAAAAACTATAGGATA
LOC_Os05g01444
Os.55730.1.S1_at--645--9811Chr05:236384..236408 (25 bp)
TAAATTAATGAAGAAGCAACCAGCT
LOC_Os05g01444
Os.55730.1.S1_at--726--5371Chr05:236393..236417 (25 bp)
GAAGAAGCAACCAGCTAATGCTAAT
LOC_Os05g01444
Os.55730.1.S1_at--495--5151Chr05:236399..236423 (25 bp)
GCAACCAGCTAATGCTAATAATTAA
LOC_Os05g01444
Os.55730.1.S1_at--1138--351Chr05:236416..236440 (25 bp)
ATAATTAAGGTCCATTCTTGATGAA
LOC_Os05g01444
Target Sequence 
GATCCAGACCTTGAAACTGTAACCACTACTGTACTGTAGTAATAATCACTGAGCAATACCAAAAACTATAGGATAAATTA
ATGAAGAAGCAACCAGCTAATGCTAATAATTAAGGTCCATTCTTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis