Browse Element(s) Details


Os.7299.1.S1_at

Description gb:AK069824.1
DB_XREF= gi:32979848
TID=Os.7299.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026A06, full insert sequence.
FL= gb:AK069824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0146011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os05g01444OsAffx.26677.1.S1_x_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01444Os.55730.1.S1_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01450Os.11420.1.S1_at11/115+238114..240333Eukaryotic translation initiation factor 3 subunit 5, putative, expressed
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0010017biological_processred or far red light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7299.1.S1_at--245--10591Chr05:242724..242748 (25 bp)
TTCTCTGTGATCTTAGGCTGTTGCT
LOC_Os05g01460
Os.7299.1.S1_at--986--2251Chr05:242693..242717 (25 bp)
AAATCTAGGTGCCTGACTACCTTTG
LOC_Os05g01460
Os.7299.1.S1_at--35--6371Chr05:242640..242664 (25 bp)
GATCCAGTGATCACACCCAGTGGTA
LOC_Os05g01460
Os.7299.1.S1_at--834--7791Chr05:242603..242627 (25 bp)
GGTCCATAATCCTTGAACATCTTTG
LOC_Os05g01460
Os.7299.1.S1_at--710--7471Chr05:242144..242168 (25 bp)
GTGGGCAATTTCGACCCGGTGACAC
LOC_Os05g01460
Os.7299.1.S1_at--559--1471Chr05:242050..242074 (25 bp)
AGAATCACAGTTGGGCCTACAAGTT
LOC_Os05g01460
Os.7299.1.S1_at--681--731Chr05:242016..242040 (25 bp)
ATGTTGCTCTGTAGTTGCTTAGTGC
LOC_Os05g01460
Os.7299.1.S1_at--191--7611Chr05:241954..241978 (25 bp)
GGGAATTCTTTGCTTTTCTGATGTA
LOC_Os05g01460
Os.7299.1.S1_at--530--351Chr05:241925..241949 (25 bp)
ATAAGCAAGTTCATTCGTGCCCTCA
LOC_Os05g01460
Os.7299.1.S1_at--4--7611Chr05:241882..241906 (25 bp)
GGGCAACTTCTGACGAACCTTGGAC
LOC_Os05g01460
Os.7299.1.S1_at--392--7871Chr05:241822..241846 (25 bp)
GGTTTCAGACATACCGTGCCAAAAT
LOC_Os05g01460
Target Sequence 
TTCTCTGTGATCTTAGGCTGTTGCTACCTGAAAATCTAGGTGCCTGACTACCTTTGCTGCCAAATAACCTTTGAGATTTT
TAGAGATCCAGTGATCACACCCAGTGGTATAACGTATGAGAGGTCCATAATCCTTGAACATCTTTGCAAGGTGGGCAATT
TCGACCCGGTGACACGAGAGCCTCTGAAAGAGCATCAATTGGTTCCTAACCTGGCTATAAAGGAAGCAGTCCAAGCCTAC
CTCAAGAATCACAGTTGGGCCTACAAGTTGAACTGATGATGTTGCTCTGTAGTTGCTTAGTGCTAACAACAGGTGTTGAT
AAAATGTTGGGTTGTCAAGGGGGAATTCTTTGCTTTTCTGATGTAATGTATAAGCAAGTTCATTCGTGCCCTCATGGAAT
TGATTGATTCTTGGGCAACTTCTGACGAACCTTGGACAATTGTACATAAAACATCATAGCAGAACCTTGGACGGTTTCAG
ACATACCGTGCCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis