Browse Element(s) Details


Os.36864.1.A1_at

Description gb:AK062492.1
DB_XREF= gi:32972510
TID=Os.36864.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-H08, full insert sequence.
FL= gb:AK062492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g014903/11GTP-binding protein YPTM1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36864.1.A1_at--552--411Chr05:265510..265534 (25 bp)
ATCATGCGTGCACAAAGTGTTCGTT
LOC_Os05g01490
Os.36864.1.A1_at--475--1111Chr05:265495..265519 (25 bp)
AGTGTTCGTTACTTGCCACAGTTTG
LOC_Os05g01490
Os.36864.1.A1_at--659--4371Chr05:265480..265504 (25 bp)
CCACAGTTTGTGATATCATCGGTTT
LOC_Os05g01490
Os.36864.1.A1_at--373--6331Chr05:265384..265408 (25 bp)
GATGCAAGCTTGTCACTCTTGTCAT
NONE
Os.36864.1.A1_at--996--3751Chr05:265369..265393 (25 bp)
CTCTTGTCATTTGCTGGTGTTTGGA
NONE
Os.36864.1.A1_at--389--6211Chr05:265346..265370 (25 bp)
GAGGCTTGTCAGTTTCTGCTTATTA
NONE
Os.36864.1.A1_at--419--7991Chr05:265318..265342 (25 bp)
GGATGTTGACTGATGCAACCCTGAA
NONE
Os.36864.1.A1_at--705--1511Chr05:265062..265086 (25 bp)
AGCAGCATTGCTTCTTTTCACTATT
NONE
Os.36864.1.A1_at--373--10571NONE
TTCTTTTCACTATTGGGCATCACCG
NONE
Os.36864.1.A1_at--929--1771Chr05:265031..265055 (25 bp)
ACCGGCAGCGACATTGATCGTCTTC
NONE
Os.36864.1.A1_at--1159--6351NONE
GATGCCACGGGCTTCTTGCTGAAGG
NONE
Target Sequence 
ATCATGCGTGCACAAAGTGTTCGTTACTTGCCACAGTTTGTGATATCATCGGTTTGTTAAAACAGTTTATAAGCCTAAAT
TTAATATATATGATGCATGATGTTGGAACTGAACATCATGATGCTTGATGCAAGCTTGTCACTCTTGTCATTTGCTGGTG
TTTGGAGGCTTGTCAGTTTCTGCTTATTAGCAGGATGTTGACTGATGCAACCCTGAAAAAATGGACAAGAGTAATGCAGG
AGGAACCAATGATCTTGACATGATACTACTGTATATGTAGTAATTAACTGACTTTAGGTAATATATGACTGTCAGGTATA
GCAAGGTAAATATTTATCTGACAAAATGAATCAACGAAGCTTTAATAAACTTAAAAAGAAAGAACAATCACAAGCACCAC
ACAAGGTACACGAAATGGACATCTGAAACTGAAGGATTCGTTCTAAGTTGAGCAGCATTGCTTCTTTTCACTATTGGGCA
TCACCGGCAGCGACATTGATCGTCTTCCCTTCCTTGAACACCTCCAGCGGGCACCTGCCCCGCCTTCATCTGATGCCACG
GGCTTCTTGCTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36864.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis