Browse Element(s) Details


Os.12383.1.S1_at

Description gb:AK102713.1
DB_XREF= gi:32987922
TID=Os.12383.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104P17, full insert sequence.
FL= gb:AK102713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0148011/11Ras-related protein Rab11C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01450Os.11420.1.S1_at11/115+238114..240333Eukaryotic translation initiation factor 3 subunit 5, putative, expressed
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12383.1.S1_at--1023--8051Chr05:264696..264720 (25 bp)
GGAGCAGTCCTGGTCTACGACGTGA
LOC_Os05g01480
Os.12383.1.S1_at--55--10271Chr05:264735..264759 (25 bp)
TTTGACAACATCAGCCGGTGGCTCA
LOC_Os05g01480
Os.12383.1.S1_at--77--5331Chr05:264876..264900 (25 bp)
GAAGGGCTGTCCTACATTGAGACTT
LOC_Os05g01480
Os.12383.1.S1_at--906--51Chr05:264891..264915 (25 bp)
ATTGAGACTTCAGCTCTTGAGGCCA
LOC_Os05g01480
Os.12383.1.S1_at--819--911Chr05:264928..264952 (25 bp)
AGGCATTCCAGCTGATTCTCGGTGA
LOC_Os05g01480
Os.12383.1.S1_at--392--10571Chr05:264943..264967 (25 bp)
TTCTCGGTGACATTTACAGGGCCAT
LOC_Os05g01480
Os.12383.1.S1_at--964--5171Chr05:265076..265100 (25 bp)
GCAATGCTGCTCAACTTAGAACGAA
LOC_Os05g01480
Os.12383.1.S1_at--1132--5251Chr05:265098..265122 (25 bp)
GAATCCTTCAGTTTCAGATGTCATT
LOC_Os05g01480
Os.12383.1.S1_at--686--1311Chr05:265113..265137 (25 bp)
AGATGTCATTTCGTGTACCTTGTGT
LOC_Os05g01480
Os.12383.1.S1_at--1092--7771Chr05:265138..265162 (25 bp)
GGTGCTTGTGATTGTTCTTTCTTTT
LOC_Os05g01480
Os.12383.1.S1_at--1159--171Chr05:265205..265229 (25 bp)
ATTTACCTTGCTATACCTGACAGTC
LOC_Os05g01480
Target Sequence 
GGAGCAGTCCTGGTCTACGACGTGAGCAAGCCCACAACCTTTGACAACATCAGCCGGTGGCTCAAGGAGCTCCGCGNACC
ACGCTGATGCAAACATCAGAATCATGCTCGTCGGCAACAAGACTGATCTGAAGCACCTTCGGGCCGTCGCGACAGACGAT
GCGCACAAGTTTGCTGAGGCAGAAGGGCTGTCCTACATTGAGACTTCAGCTCTTGAGGCCACAAATGTGGAGGAGGCATT
CCAGCTGATTCTCGGTGACATTTACAGGGCCATCAGCAANGAAGCCCGTGGCATCAGATGAAGGCGGGGCAGGTGCCGCT
GGAGGTGTCAAAGAAGGGAAGACGATCAATGTCGCTGCCGGTGATGCCAATAGTGAAAAGAAGCAATGCTGCTCAACTTA
GAACGAATCCTTCAGTTTCAGATGTCATTTCGTGTACCTTGTGTGGTGCTTGTGATTGTTCTTTCTTTTTAAGTTTATTA
AAGCTTCGTTGATTCATTTTGTCAGATAAATATTTACCTTGCTATACCTGACAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12383.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis