Browse Element(s) Details


Os.27562.1.S1_at

Description gb:AK069692.1
DB_XREF= gi:32979716
TID=Os.27562.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026D10, full insert sequence.
FL= gb:AK069692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0152011/11YT521-B-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27562.1.S1_at--222--6531Chr05:283433..283457 (25 bp)
GATTTTCAAGGCATATCACCAGGGA
LOC_Os05g01520
Os.27562.1.S1_at--986--3211Chr05:283321..283345 (25 bp)
CAAGATTTGTTCTCTGATGACTTCA
LOC_Os05g01520
Os.27562.1.S1_at--570--6311Chr05:283306..283330 (25 bp)
GATGACTTCAGATCAATATCAGTGG
LOC_Os05g01520
Os.27562.1.S1_at--172--3411Chr05:282568..282592 (25 bp)
CAGCATGCAGAGCTTGAGTTTCTAT
LOC_Os05g01520
Os.27562.1.S1_at--493--6651Chr05:282493..282517 (25 bp)
GTTGACGAGTCAGTGAAGCAGCTCA
LOC_Os05g01520
Os.27562.1.S1_at--888--4911Chr05:282466..282490 (25 bp)
GCTTGACCCTCCTTTGCAAAATTGG
LOC_Os05g01520
Os.27562.1.S1_at--789--3131Chr05:282447..282471 (25 bp)
AATTGGGTTGATCCAACGACGGGAT
LOC_Os05g01520
Os.27562.1.S1_at--361--3091Chr05:282305..282329 (25 bp)
AATAGTTACTTATCTGGTGGCTACA
LOC_Os05g01520
Os.27562.1.S1_at--765--7711Chr05:282290..282314 (25 bp)
GGTGGCTACAGTGACTTTCCATAGA
LOC_Os05g01520
Os.27562.1.S1_at--1146--3011Chr05:282213..282237 (25 bp)
AATGCCATATTATCTGCGTGAACAA
LOC_Os05g01520
Os.27562.1.S1_at--213--5291Chr05:282178..282202 (25 bp)
GAATGTGCATCTCTTCTGATGTGTA
LOC_Os05g01520
Target Sequence 
GATTTTCAAGGCATATCACCAGGGAACATCAATTCTGGATGATTTTTATTTTTACGAAGAAAAGGAAAACATGCGCCATG
CCCAGAAGGGAAGAAATTTGGAAACAACCAATCAAGATTTGTTCTCTGATGACTTCAGATCAATATCAGTGGAGAATTTG
GAGGCCAGCATGCAGAGCTTGAGTTTCTATGAAACTTGGGAGTAATTTAGATTGTTCTAGTGTGCATCCAAAATCAGTAA
GTTGACGAGTCAGTGAAGCAGCTCAAGGCTTGACCCTCCTTTGCAAAATTGGGTTGATCCAACGACGGGATAATACACAG
ATGAATCCAAACAATTTTAATGATTATATNNNNATATATATAGTATTTTGTGTAGAACCACGTATGATTGTGGGTAACCT
TAGAACAAGATTTGAACACACTGAATGTTTGTAATAGTTACTTATCTGGTGGCTACAGTGACTTTCCATAGACTAGATGA
ATTTGACGAAACTGGCAAGAACAAAGCACAAGTCTGTAGGCAATAATGCCATATTATCTGCGTGAACAATCATGTTGATG
AATGTGCATCTCTTCTGATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis