Browse Element(s) Details


Os.37899.1.S1_at

Description gb:AK063178.1
DB_XREF= gi:32973196
TID=Os.37899.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-A08, full insert sequence.
FL= gb:AK063178.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0156011/11Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0000220cellular_componenthydrogen-transporting ATPase V0 domain
GO:0016887molecular_functionATPase activity
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37899.1.S1_at--542--611Chr05:304531..304555 (25 bp)
ATGCGCAGCAGCCAAAGTTGTTCGT
LOC_Os05g01560
Os.37899.1.S1_at--438--8431Chr05:304460..304484 (25 bp)
GGCCTGATTGTTGGTATCATCCTCT
LOC_Os05g01560
Os.37899.1.S1_at--1116--9131Chr05:304428..304452 (25 bp)
TGCGGGCCAATCTCGAGCGGATTAG
LOC_Os05g01560
Os.37899.1.S1_at--482--5511Chr05:304391..304415 (25 bp)
GAACAAGACACGGTTCACCATTGTA
LOC_Os05g01560
Os.37899.1.S1_at--710--6751Chr05:304379..304403 (25 bp)
GTTCACCATTGTATTCTATTCCAAG
LOC_Os05g01560
Os.37899.1.S1_at--602--191Chr05:304349..304373 (25 bp)
ATTTCTTCTTATAGACTGCTTGGTC
LOC_Os05g01560
Os.37899.1.S1_at--487--9071Chr05:304333..304357 (25 bp)
TGCTTGGTCTTGTCTGTGTTTATAC
LOC_Os05g01560
Os.37899.1.S1_at--153--7191Chr05:304322..304346 (25 bp)
GTCTGTGTTTATACTCATTGTCTGT
LOC_Os05g01560
Os.37899.1.S1_at--53--7191Chr05:304303..304327 (25 bp)
GTCTGTATTCAAGCTATTGTGGGTT
LOC_Os05g01560
Os.37899.1.S1_at--1016--7051Chr05:304251..304275 (25 bp)
GTAATAATCGGTACCAGGCCGTCCG
LOC_Os05g01560
Os.37899.1.S1_at--732--3491Chr05:304237..304261 (25 bp)
CAGGCCGTCCGAGATGTGATTAATA
LOC_Os05g01560
Target Sequence 
ATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTATCTTTGCAGAAGCTCTTGCTCTGTATGGCCTGATT
GTTGGTATCATCCTCTCGTCTCGTGCGGGCCAATCTCGAGCGGATTAGAGGGTTTTGGAAGAACAAGACACGGTTCACCA
TTGTATTCTATTCCAAGNNGTTAATTTCTTCTTATAGACTGCTTGGTCTTGTCTGTGTTTATACTCATTGTCTGTATTCA
AGCTATTGTGGGTTGTTGNATTTATTATTTGAATTTTTGAAGTAATAATCGGTACCAGGCCGTCCGAGATGTGATTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis