Browse Element(s) Details


Os.54343.1.S1_at

Description gb:AK103530.1
DB_XREF= gi:32988739
TID=Os.54343.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131N14, full insert sequence.
FL= gb:AK103530.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0159010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative
LOC_Os05g01620OsAffx.14492.1.S1_at11/115+346519..348964F-box domain containing protein
LOC_Os05g01630Os.23607.1.S1_at11/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01630OsAffx.14492.1.S1_at1/115+350802..353725F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54343.1.S1_at--692--10531Chr05:331048..331072 (25 bp)
TTCAGTGGCGGGATGAGTCTCAATC
LOC_Os05g01590
Os.54343.1.S1_at--599--1371Chr05:331121..331145 (25 bp)
AGAGCCTTGCTATGATAATCTTCGC
LOC_Os05g01590
Os.54343.1.S1_at--214--10031Chr05:331151..331175 (25 bp)
TAGAATATCACTTGGTTTGCCGCCT
LOC_Os05g01590
Os.54343.1.S1_at--903--10431Chr05:331176..331200 (25 bp)
TTAGGTCCCTTAGAACTTGATCATA
LOC_Os05g01590
Os.54343.1.S1_at--766--10191NONE
TATTAAGTCCGCTTTTCGTGCATCG
NONE
Os.54343.1.S1_at--774--2931Chr05:331742..331766 (25 bp)
AAGGCATTGTCTGGTGCTTTCAAAC
LOC_Os05g01590
Os.54343.1.S1_at--10--7371Chr05:331770..331794 (25 bp)
GTGACTAACCCTGTCTGTTCATGAA
LOC_Os05g01590
Os.54343.1.S1_at--179--7891Chr05:331843..331867 (25 bp)
GGTTACTGGAGCTTCAACACACTAA
LOC_Os05g01590
Os.54343.1.S1_at--1059--1371Chr05:331909..331933 (25 bp)
AGACGGTCAGACCAGCTCTCGATGG
LOC_Os05g01590
Os.54343.1.S1_at--180--191Chr05:332022..332046 (25 bp)
ATTTCAGCGCTCCAATTTATTCTTG
LOC_Os05g01590
Os.54343.1.S1_at--736--9191Chr05:332050..332074 (25 bp)
TGCCAGGCAATATACAGTGTCTCTT
LOC_Os05g01590
Target Sequence 
TTCAGTGGCGGGATGAGTCTCAATCAAATAAATCAAGGGAAAGAGTTTGGAATGAAAGTGATGTAGATGAGGAAGAGCCT
TGCTATGATAATCTTCGCAGCCATAGAATATCACTTGGTTTGCCGCCTTTAGGTCCCTTAGAACTTGATCATATTAAGTC
CGCTTTTCGTGCATCGGCTCTCAAGTGGCACCCAGACAAACATCAAGGAGCATCACAGGCTGAAGCTGAGGAAAGGTTCA
AACGCTGTGTAGAAGCATACAAGGCATTGTCTGGTGCTTTCAAACCAAGTGACTAACCCTGTCTGTTCATGAATGAAATC
TGAAGACTATCACTAAAGATGTTACTGGAGATCACTAACGAGGTTACTGGAGCTTCAACACACTAAGAGACAGTTGAATC
TGCTAAAAAAAAGTGTAGAAGATTGTTAGACGGTCAGACCAGCTCTCGATGGCATTTTTAACAATTAAACTTGTTTAGAG
TGGTCACTGAGGAAGCGATTATTCGTGTATAATTTCATGAAATCAGTTGAAGCGAAACAAATTTCAGCGCTCCAATTTAT
TCTTGGAATGCCAGGCAATATACAGTGTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis