Browse Element(s) Details


OsAffx.14492.1.S1_at

Description tigr:9633.m00073
TID=OsAffx.14492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0162011/11F-box domain containing protein
LOC_Os05g016301/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative
LOC_Os05g01620OsAffx.14492.1.S1_at11/115+346519..348964F-box domain containing protein
LOC_Os05g01630Os.23607.1.S1_at11/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01630OsAffx.14492.1.S1_at1/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01640NANA5+359216..359803retrotransposon protein, putative, unclassified
LOC_Os05g01650NANA5+362911..369565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g01660NANA5+371919..374565retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14492.1.S1_at--707--10511Chr05:347358..347382 (25 bp)
TTCAAGCTCAGCGACTGGCTGTCGA
LOC_Os05g01620
OsAffx.14492.1.S1_at--1020--5772Chr05:347335..347359 (25 bp)
GACCGTGCCAACTCTAACTAGTTTG
LOC_Os05g01620
OsAffx.14492.1.S1_at--1041--9571Chr05:347097..347121 (25 bp)
TCTTCCCCATATTCCGCAATCTTAG
LOC_Os05g01620
OsAffx.14492.1.S1_at--387--4951Chr05:347055..347079 (25 bp)
GCATTAGTCTTGATTGTGGCCTCGA
LOC_Os05g01620
OsAffx.14492.1.S1_at--1038--10651Chr05:347000..347023 (24 bp)
TTCCTCGAGCGATTTCATGTTAAGA
LOC_Os05g01620
OsAffx.14492.1.S1_at--297--2811Chr05:346854..346877 (24 bp)
AAGATATCTCTCCACATATGTGACG
LOC_Os05g01620
OsAffx.14492.1.S1_at--222--2951Chr05:346827..346851 (25 bp)
AATGGCTTTAAGGACAGGGCTGACA
LOC_Os05g01620
OsAffx.14492.1.S1_at--48--1391Chr05:346757..346781 (25 bp)
AGACCTTGAGGTTGCTGGATATAAA
LOC_Os05g01620
OsAffx.14492.1.S1_at--249--2391Chr05:346735..346759 (25 bp)
AAACGGCTTTGAGACCACTGAGAAT
LOC_Os05g01620
OsAffx.14492.1.S1_at--126--7031Chr05:346702..346726 (25 bp)
GTACATAAGGCTTGTCATTCAGAGA
LOC_Os05g01620
OsAffx.14492.1.S1_at--408--7591Chr05:346671..346695 (25 bp)
GGGCTACAGCGAATTCACTTGCATG
LOC_Os05g01620
Target Sequence 
TTCAAGCTCAGCGACTGGCTGTCGACCGTGCCAACTCTAACTAGTTTGCATCTGGACTTCCAGGATGAGATGGTTTGGAT
CCTGCCAGAAGAGCCCAAGAAACTCTTCCCCATATTCCGCAATCTTAGGAATGTATATCTTTGCAGCATTAGTCTTGATT
GTGGCCTCGACTGGACTCTCTTTGTCCTTGAAGGCGCACCCTTCCTCGAGCGATTTCATGTTAAGATATCTCTCCACATA
TGTGACGAGAATGGCTTTAAGGACAGGGCTGACAGAAGCAATGTTGTGTGGGAAGCATCATCTGAAAGCATCAAGCATAA
GACCTTGAGGTTGCTGGATATAAACGGCTTTGAGACCACTGAGAATCTGATCAAGTACATAAGGCTTGTCATTCAGAGAG
CTGTGGGGCTACAGCGAATTCACTTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis