Browse Element(s) Details


Os.11740.1.S1_at

Description gb:AK103340.1
DB_XREF= gi:32988549
TID=Os.11740.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126A19, full insert sequence.
FL= gb:AK061651.1 gb:AK103340.1 gb:AK072796.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0160011/11Actin-97, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative
LOC_Os05g01620OsAffx.14492.1.S1_at11/115+346519..348964F-box domain containing protein
LOC_Os05g01630Os.23607.1.S1_at11/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01630OsAffx.14492.1.S1_at1/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01640NANA5+359216..359803retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11740.1.S1_at--339--3271Chr05:332827..332851 (25 bp)
CAACATTGTGCTCAGTGGTGGTACA
LOC_Os05g01600
Os.11740.1.S1_at--542--7491Chr05:332813..332837 (25 bp)
GTGGTGGTACAACCATGTTCCCAGG
LOC_Os05g01600
Os.11740.1.S1_at--417--731Chr05:332799..332823 (25 bp)
ATGTTCCCAGGCATTGCTGATCGTA
LOC_Os05g01600
Os.11740.1.S1_at--686--1251Chr05:332735..332759 (25 bp)
AGATTAAGGTCGTTGCTCCACCTGA
LOC_Os05g01600
Os.11740.1.S1_at--306--4071Chr05:332508..332532 (25 bp)
CGAGTACGACGAATCTGGCCCAGCA
LOC_Os05g01600
Os.11740.1.S1_at--605--4911Chr05:332467..332491 (25 bp)
GCTTCTGATTTTCTCAAGTGCTCTG
LOC_Os05g01600
Os.11740.1.S1_at--613--4811Chr05:332448..332472 (25 bp)
GCTCTGCTCTTGTCATCTGTAGTAT
LOC_Os05g01600
Os.11740.1.S1_at--524--5011Chr05:332379..332403 (25 bp)
GCAGGCTATGTTTGTTTTCTTTTTG
LOC_Os05g01600
Os.11740.1.S1_at--433--5991Chr05:332354..332378 (25 bp)
GAGACGACTTCTCTATGTGTTCGAT
LOC_Os05g01600
Os.11740.1.S1_at--971--6751Chr05:332281..332305 (25 bp)
GTTCACTTGTCAAACTTGGTTCGTT
LOC_Os05g01600
Os.11740.1.S1_at--1009--10791Chr05:332226..332250 (25 bp)
TTGTTCTATACATTGCTCCAAGGGT
LOC_Os05g01600
Target Sequence 
CAACATTGTGCTCAGTGGTGGTACAACCATGTTCCCAGGCATTGCTGATCGTATGAGCAAGGAGATCACTGCCCTTGCCC
CGAGCAGCATGAAGATTAAGGTCGTTGCTCCACCTGAGCGCAAGTACAGCGTCTGGATCGGAGGGTCGATCCTAGCCTCA
CTCAGCACTTTCCAACAGATGTGGATATCAAAGGACGAGTACGACGAATCTGGCCCAGCAATTGTCCACAGGAAATGCTT
CTGATTTTCTCAAGTGCTCTGCTCTTGTCATCTGTAGTATCGAGTTATGTTTGATTCGTTTTTCTAGCNATGTATTGGAG
ATTTGCAGGCTATGTTTGTTTTCTTTTTGGAGACGACTTCTCTATGTGTTCGATCAGTGTAAGANTNTCCTATGTTTGTG
TCATCTCAGATTGTTTGTTTGAGTTCACTTGTCAAACTTGGTTCGTTTGATTGGTCAGAACTGTCTGTATGAGCTTATTG
TTCTATACATTGCTCCAAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11740.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis