Browse Element(s) Details


OsAffx.26679.1.S1_at

Description tigr:9633.m00072
TID=OsAffx.26679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=chromosome condensation factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0161011/11Chromosome condensation factor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01570Os.7779.1.S1_x_at11/115+316959..318821Integral membrane protein DUF6 containing protein, expressed
LOC_Os05g01580OsAffx.14491.1.S1_at11/115+323538..325468Integral membrane protein DUF6 containing protein
LOC_Os05g01590Os.54343.1.S1_at10/115+329682..332081DnaJ domain containing protein, expressed
LOC_Os05g01600Os.11740.1.S1_at11/115+332178..334669Actin-97, putative, expressed
LOC_Os05g01610OsAffx.26679.1.S1_at11/115+340542..344003Chromosome condensation factor, putative
LOC_Os05g01620OsAffx.14492.1.S1_at11/115+346519..348964F-box domain containing protein
LOC_Os05g01630Os.23607.1.S1_at11/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01630OsAffx.14492.1.S1_at1/115+350802..353725F-box domain containing protein, expressed
LOC_Os05g01640NANA5+359216..359803retrotransposon protein, putative, unclassified
LOC_Os05g01650NANA5+362911..369565retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26679.1.S1_at--731--9831Chr05:343042..343066 (25 bp)
TAAACGTAGCTCACCAGCCACAGAA
LOC_Os05g01610
OsAffx.26679.1.S1_at--545--1471Chr05:343063..343087 (25 bp)
AGAATGAGCTCCTCAATGCTTCAAA
LOC_Os05g01610
OsAffx.26679.1.S1_at--268--3031Chr05:343086..343110 (25 bp)
AATGCGCAAAGCCTGAACTCTGGAC
LOC_Os05g01610
OsAffx.26679.1.S1_at--671--5471Chr05:343100..343124 (25 bp)
GAACTCTGGACGATCATTGCATCCA
LOC_Os05g01610
OsAffx.26679.1.S1_at--657--5251Chr05:343129..343153 (25 bp)
GAATCTCAAGCCAACACAGGTTACT
LOC_Os05g01610
OsAffx.26679.1.S1_at--1--9751Chr05:343157..343181 (25 bp)
TAATGCTACCGAAGCTAGTGAAGGC
LOC_Os05g01610
OsAffx.26679.1.S1_at--238--9011Chr05:343175..343199 (25 bp)
TGAAGGCAGCGCTCAAAGCCATCGA
LOC_Os05g01610
OsAffx.26679.1.S1_at--856--2651Chr05:343190..343214 (25 bp)
AAGCCATCGAATTACTAGTCCCTGC
LOC_Os05g01610
OsAffx.26679.1.S1_at--664--10471Chr05:343201..343225 (25 bp)
TTACTAGTCCCTGCAAGTTGGATGT
LOC_Os05g01610
OsAffx.26679.1.S1_at--159--6291Chr05:343221..343245 (25 bp)
GATGTTCCTCATCGAAGAGCGCACA
LOC_Os05g01610
OsAffx.26679.1.S1_at--457--4611Chr05:343252..343276 (25 bp)
GCGACGATATGCTGACTGCGAGTCA
LOC_Os05g01610
Target Sequence 
TAAACGTAGCTCACCAGCCACAGAATGAGCTCCTCAATGCTTCAAATGCGCAAAGCCTGAACTCTGGACGATCATTGCAT
CCAAATGGAATCTCAAGCCAACACAGGTTACTAGGTAATGCTACCGAAGCTAGTGAAGGCAGCGCTCAAAGCCATCGAAT
TACTAGTCCCTGCAAGTTGGATGTTCCTCATCGAAGAGCGCACAGCAACAGCGACGATATGCTGACTGCGAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis