Browse Element(s) Details


Os.12600.1.S1_at

Description gb:CR291731
DB_XREF= gi:44678297
DB_XREF=CR291731
CLONE=y789c02p3
TID=Os.12600.1
CNT=68
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12600 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564425.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g015107/11cytoplasmic membrane protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed
LOC_Os05g01560Os.37899.1.S1_at11/115+304176..306192Vacuolar ATP synthase 16 kDa proteolipid subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12600.1.S1_at--854--10231Chr05:281549..281573 (25 bp)
TTTGGCGGCGTTCCGTCGAGTCCAA
LOC_Os05g01510
Os.12600.1.S1_at--425--3191Chr05:281571..281595 (25 bp)
CAAGGACGCCGATCAAATTAGTGTA
LOC_Os05g01510
Os.12600.1.S1_at--1041--7511Chr05:281604..281628 (25 bp)
GTGGAGAGTGATCTGTCCAATACAA
LOC_Os05g01510
Os.12600.1.S1_at--672--6591Chr05:281674..281698 (25 bp)
GATTGAGATTGGTCCCTGCCAACAT
LOC_Os05g01510
Os.12600.1.S1_at--311--9211Chr05:281690..281714 (25 bp)
TGCCAACATTTTGCTGGGCCATCCT
LOC_Os05g01510
Os.12600.1.S1_at--1052--3531Chr05:281709..281733 (25 bp)
CATCCTGGACGCCTGTATGAACAAA
LOC_Os05g01510
Os.12600.1.S1_at--398--5511Chr05:281727..281751 (25 bp)
GAACAAAATCTATCTTCAGAGGCAT
LOC_Os05g01510
Os.12600.1.S1_at--355--5191Chr05:281939..281963 (25 bp)
GCAATTCAAAATGCTTCCTAGGAAA
NONE
Os.12600.1.S1_at--905--4291Chr05:281955..281979 (25 bp)
CCTAGGAAATCTGCAACAAACCTTT
NONE
Os.12600.1.S1_at--262--2191Chr05:281970..281994 (25 bp)
ACAAACCTTTCTTTACTGTCTCTAG
NONE
Os.12600.1.S1_at--159--9911Chr05:281983..282007 (25 bp)
TACTGTCTCTAGATTATGTTTTTGC
NONE
Target Sequence 
TTTGGCGGCGTTCCGTCGAGTCCAAGGACGCCGATCAAATTAGTGTAGCCGTGATGTGGAGAGTGATCTGTCCAATACAA
CGCTTCTGAAGCTGTATATATCAATTATAATTTGTCATGTCCTCAGATTGAGATTGGTCCCTGCCAACATTTTGCTGGGC
CATCCTGGACGCCTGTATGAACAAAATCTATCTTCAGAGGCATATATGATGATTCAGCGTATTGCATTCAGGCGTCTGCC
TGGGTTATATTTCCCTCTAAATTTGAGTCAAAACTGAAGCCTTCTCGTCGACCTGGTTTAGTGTTTCGCTCTTCACAGCC
ATGGTACCTCATTGAGATGAGCATTCATTTGCTAATTTGCGTTTAATTGTGGATTTGTGGTTCATGGCAAGCAATTCAAA
ATGCTTCCTAGGAAATCTGCAACAAACCTTTCTTTACTGTCTCTAGATTATGTTTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis