Browse Element(s) Details


Os.18560.1.S1_at

Description gb:AK069395.1
DB_XREF= gi:32979419
TID=Os.18560.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011N07, full insert sequence.
FL= gb:AK069395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0150010/11CAP-Gly domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01520Os.27562.1.S1_at11/115+282174..289147YT521-B-like family protein, expressed
LOC_Os05g01530Os.11969.1.S1_at11/115+290696..291722expressed protein
LOC_Os05g01540Os.27339.1.S1_at11/115+295261..298816retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01550Os.19616.1.S1_at11/115+299203..302456Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0007021biological_processtubulin folding
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18560.1.S1_at--610--8651Chr05:274006..274118 (25 bp)
TGGGCTTATAAGTATCACCTTGAAA
LOC_Os05g01500
Os.18560.1.S1_at--1128--4271NONE
CCTGCAACTACTGTTGGAAAGTTAA
NONE
Os.18560.1.S1_at--75--411Chr05:274653..274831 (25 bp)
ATCTTGAGGAAGAGGGTTGCCCTAT
LOC_Os05g01500
Os.18560.1.S1_at--454--2791Chr05:274819..274840 (22 bp)
AAGAGGGTTGCCCTATGCCGCAATT
LOC_Os05g01500
Os.18560.1.S1_at--1113--3651Chr05:274828..274852 (25 bp)
CTATGCCGCAATTCTTCGAGGAAGA
LOC_Os05g01500
Os.18560.1.S1_at--724--9171Chr05:274831..274855 (25 bp)
TGCCGCAATTCTTCGAGGAAGACAC
LOC_Os05g01500
Os.18560.1.S1_at--293--951Chr05:274846..274870 (25 bp)
AGGAAGACACGGTTTCTCTCATGGA
LOC_Os05g01500
Os.18560.1.S1_at--509--1411Chr05:274850..274874 (25 bp)
AGACACGGTTTCTCTCATGGAGCTT
LOC_Os05g01500
Os.18560.1.S1_at--320--1931Chr05:274854..274878 (25 bp)
ACGGTTTCTCTCATGGAGCTTGGGA
LOC_Os05g01500
Os.18560.1.S1_at--777--9511Chr05:274862..274886 (25 bp)
TCTCATGGAGCTTGGGATCGGCACG
LOC_Os05g01500
Os.18560.1.S1_at--848--4911Chr05:274871..274895 (25 bp)
GCTTGGGATCGGCACGGGATCGACC
LOC_Os05g01500
Target Sequence 
TGGGCTTATAAGTATCACCTTGAAATGCGTAGGGCCATCTATGGGTGAGAAGCAACCATTGACAAAGAAGCTGCCTCCTG
CAACTACTGTTGGAAAGTTAAAATCTTTGTGCGAGAGCTTCTTTAAACTGAAGGACGTTAAACTGAGACTGTATCTTGAG
GAAGAGGGTTGCCCTATGCCGCAATTCTTCGAGGAAGACACGGTTTCTCTCATGGAGCTTGGGATCGGCACGGGATCGAC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis