Browse Element(s) Details


Os.27980.1.S1_at

Description gb:CB966685
DB_XREF= gi:30228795
DB_XREF=NL41_F02
CLONE=NL41_F02
TID=Os.27980.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27980 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g474801/11hypothetical protein
LOC_Os04g196201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27980.1.S1_at--604--291Chr03:27878561..27878585 (25 bp)
ATAGCAACAACCAACGGCTACTCCA
NONE
Os.27980.1.S1_at--357--8311NONE
GGCTACTCCACATTGGCGACATTGA
NONE
Os.27980.1.S1_at--897--4251Chr02:13116864..13116888 (25 bp)
CCGGTGATGGAGGATGTTTGCTATT
NONE
Os.27980.1.S1_at--1122--9751Chr02:13116756..13116782 (25 bp)
TAATGCGCAGCGTCGCTCATCTCTA
NONE
Os.27980.1.S1_at--1113--106714Chr10:4022672..4022696 (25 bp)
TTCCATGATTCCATCGTCGACTACT
NONE
Os.27980.1.S1_at--1086--9358Chr12:14291478..14291502 (25 bp)
TCGACTACTGCTCGCCACCTGGTTG
NONE
Os.27980.1.S1_at--806--8572Chr02:13035280..13035482 (25 bp)
TGGTTGTCCTCTCCACTACCAGTCA
NONE
Os.27980.1.S1_at--495--1172Chr06:17649163..17649187 (23 bp)
AGTCACAAGACACAGACCTCTCTCT
NONE
Os.27980.1.S1_at--564--1755Chr07:15709659..15709678 (20 bp)
ACCTCTCTCTTCATCCTTATAGCAA
NONE
Os.27980.1.S1_at--581--4351Chr02:13116615..13116639 (25 bp)
CCAGCAAGCCACCAGAAAGATTTTT
NONE
Os.27980.1.S1_at--184--10372Chr03:27877969..27877992 (24 bp)
TTTTTCATTCATACGGCTATTTTGG
NONE
Target Sequence 
ATAGCAACAACCAACGGCTACTCCACATTGGCGACATTGATAGAACAAGCAAGTCCTACATTTGCACATCGTGCTCCATG
TGGCTGGCCACAGAGGATAGAGTGGAATCCGCCGGTGATGGAGGATGTTTGCTATTTTTCTTTTGCTCGTCATCTCTATT
GACATGAACGAGAATGTTTTTGCATTTTTTTTTGCTTGCTAGATGATGGATGGCTGCTAATGCGCAGCGTCGCTCATCTC
TAGACCACACCGCTACATCCTTCCATGATTCCATCGTCGACTACTGCTCGCCACCTGGTTGTCCTCTCCACTACCAGTCA
CAAGACACAGACCTCTCTCTTCATCCTTATAGCAAGATCCAGCAAGCCACCAGAAAGATTTTTGATTGAACCATTTTTTT
TCTTNTTCTAGTTNGATTCACCTGTGAGNNATTTTATCGCTTGNTGTGATTGAGCTTGTAANTTTTTTCATTCATACGGC
TATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis