Browse Element(s) Details


Os.10547.1.S1_at

Description gb:AK068558.1
DB_XREF= gi:32978575
TID=Os.10547.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153F20, full insert sequence.
FL= gb:AK068558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4750011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47550Os.1799.1.S1_a_at11/113+26834905..26837463expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0045045biological_processsecretory pathway
GO:0016020cellular_componentmembrane
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10547.1.S1_at--811--2271Chr03:26813593..26813617 (25 bp)
AAATCCTTATGCACAGCCTGCTGGG
LOC_Os03g47500
Os.10547.1.S1_at--80--1671Chr03:26813607..26813631 (25 bp)
AGCCTGCTGGGTTTCACTATGGGTA
LOC_Os03g47500
Os.10547.1.S1_at--631--8131Chr03:26813657..26813681 (25 bp)
GGACATATGGGTCATGCCGCCCACG
LOC_Os03g47500
Os.10547.1.S1_at--395--2171Chr03:26813692..26813716 (25 bp)
ACAAGGACCACTGGAGCAACCGCAG
LOC_Os03g47500
Os.10547.1.S1_at--17--2951Chr03:26813735..26813759 (25 bp)
AAGGCCCTGCTAATCATGGTTGGAT
LOC_Os03g47500
Os.10547.1.S1_at--766--6531Chr03:26813757..26813781 (25 bp)
GATTTCTTGTGGTTGCAAGCCTTCT
LOC_Os03g47500
Os.10547.1.S1_at--1050--1531Chr03:26813840..26813864 (25 bp)
AGCATATCCCTGTGGCGTTGTGGTG
LOC_Os03g47500
Os.10547.1.S1_at--724--7331Chr03:26813866..26813890 (25 bp)
GTGCAGTTTCTTCCTGCCAAATGTG
LOC_Os03g47500
Os.10547.1.S1_at--879--4971Chr03:26813956..26813980 (25 bp)
GCATCTGGCTTTTTATAGCCTCATA
LOC_Os03g47500
Os.10547.1.S1_at--1022--8631Chr03:26814066..26814090 (25 bp)
TGGGATGTTGTCTCCATGTGTTGTA
LOC_Os03g47500
Os.10547.1.S1_at--853--3091Chr03:26814101..26814125 (25 bp)
AATAGTTCTTCCCAAACTCTTGCTT
LOC_Os03g47500
Target Sequence 
AAATCCTTATGCACAGCCTGCTGGGTTTCACTATGGGTATGGCCATGGTCATGGATTCCATGGCGGACATATGGGTCATG
CCGCCCACGGTGTCCCTCGACAAGGACCACTGGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATG
GTTGGATTTCTTGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGATGGTAAAAG
AATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCCAAATGTGGCATAAGTTATTTTGCGTATTT
ACATGAAGTGTTCATAGAATATTTGCATGTAGATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATA
ATTAGGAGGAGCCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATG
TTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis