Browse Element(s) Details


OsAffx.25607.1.S1_at

Description tigr:9631.m04614
TID=OsAffx.25607.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4749011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g47480OsAffx.17242.1.S1_at3/113+26806770..26807924hypothetical protein
LOC_Os03g47480OsAffx.28616.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.1.S1_at2/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.27980.1.S1_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47480Os.37711.3.S1_x_at1/113+26806770..26807924hypothetical protein
LOC_Os03g47490OsAffx.25607.1.S1_at11/113+26808726..26811149hypothetical protein
LOC_Os03g47500Os.10547.1.S1_at11/113+26812209..26814172Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g47510OsAffx.25608.1.S1_at10/113+26817715..26821692hypothetical protein
LOC_Os03g47530NANA3+26827317..26828548Glycosyl transferase family 8 protein, expressed
LOC_Os03g47540OsAffx.25610.1.S1_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47540OsAffx.25610.1.S1_s_at11/113+26831220..26834431hypothetical protein
LOC_Os03g47550Os.1799.1.S1_a_at11/113+26834905..26837463expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25607.1.S1_at--269--2331Chr03:26808791..26808815 (25 bp)
AAAGAAGGATCCATCGACAAGAGCA
LOC_Os03g47490
OsAffx.25607.1.S1_at--482--5951Chr03:26808811..26808835 (25 bp)
GAGCAACTCCTGAAGTGTTTGCAGC
LOC_Os03g47490
OsAffx.25607.1.S1_at--1016--7411Chr03:26808825..26809339 (25 bp)
GTGTTTGCAGCGACCAGAAACCAAG
LOC_Os03g47490
OsAffx.25607.1.S1_at--30--2651Chr03:26809333..26809357 (25 bp)
AACCAAGATCACCAATATTCGCAAA
LOC_Os03g47490
OsAffx.25607.1.S1_at--932--5191Chr03:26809367..26809391 (25 bp)
GAATTGTTAAGGGAGTCTACCACAA
LOC_Os03g47490
OsAffx.25607.1.S1_at--1049--10051Chr03:26810957..26810981 (25 bp)
TAGTACATATGAACGGGAGGCATTT
LOC_Os03g47490
OsAffx.25607.1.S1_at--199--6211Chr03:26810973..26810997 (25 bp)
GAGGCATTTGGAATTGCTTGCAAGA
LOC_Os03g47490
OsAffx.25607.1.S1_at--1121--8891Chr03:26811001..26811025 (25 bp)
TGAGATTGAGCCTAGTTCTGCCCAA
LOC_Os03g47490
OsAffx.25607.1.S1_at--401--5871Chr03:26811008..26811032 (25 bp)
GAGCCTAGTTCTGCCCAAGAATGTG
LOC_Os03g47490
OsAffx.25607.1.S1_at--11--2991Chr03:26811027..26811051 (25 bp)
AATGTGATGCGGCATGCTATTGCTA
LOC_Os03g47490
OsAffx.25607.1.S1_at--594--51Chr03:26811045..26811069 (25 bp)
ATTGCTAGCTGGAAAATACTCGATG
LOC_Os03g47490
Target Sequence 
AAAGAAGGATCCATCGACAAGAGCAACTCCTGAAGTGTTTGCAGCGACCAGAAACCAAGATCACCAATATTCGCAAAGGA
ATGCGGGAATTGTTAAGGGAGTCTACCACAAGGCTCCACCATTGTTCCACCGAGTCGTAGTCACTCCATTTGCTCATTTG
GAGGAAATTAAGACAGACATATCAAATCTATCAAATGACAACAAAATTATAGTCTATAGTACATATGAACGGGAGGCATT
TGGAATTGCTTGCAAGATGATGAGATTGAGCCTAGTTCTGCCCAAGAATGTGATGCGGCATGCTATTGCTAGCTGGAAAA
TACTCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis