Browse Element(s) Details


Os.7540.1.S2_at

Description gb:AK073228.1
DB_XREF= gi:32983251
TID=Os.7540.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023N08, full insert sequence.
FL= gb:AK073228.1 gb:AK063858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2155011/11Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7540.1.S2_at--854--5371Chr03:12296897..12296921 (25 bp)
GAAGAACTGTTATGAGGCCTCCTCA
LOC_Os03g21550
Os.7540.1.S2_at--706--7971Chr03:12297148..12297172 (25 bp)
GGATCCCTTGATGGGCAACAAAGAT
LOC_Os03g21550
Os.7540.1.S2_at--444--7351Chr03:12297819..12297843 (25 bp)
GTGCAAGAGTCCTGATACCATCCTT
LOC_Os03g21550
Os.7540.1.S2_at--79--2811Chr03:12299243..12299267 (25 bp)
AAGATCTGTTGCTCCTATCAAGGCT
LOC_Os03g21550
Os.7540.1.S2_at--311--2951Chr03:12299262..12299286 (25 bp)
AAGGCTGGATTCGTTGCCCAAGTTG
LOC_Os03g21550
Os.7540.1.S2_at--74--10851Chr03:12299284..12299308 (25 bp)
TTGGTCGTCGGAAGGCTGGAACCTA
LOC_Os03g21550
Os.7540.1.S2_at--88--9791Chr03:12299307..12299331 (25 bp)
TAAGTTAAACGTCCACCCTGCTCAG
LOC_Os03g21550
Os.7540.1.S2_at--382--1211Chr03:12299400..12299424 (25 bp)
AGTTTTCACTGTGTCTACACCGTTT
LOC_Os03g21550
Os.7540.1.S2_at--185--6891Chr03:12299428..12299452 (25 bp)
GTATTTGTGACCGTAACTCTGCTTC
LOC_Os03g21550
Os.7540.1.S2_at--912--4911Chr03:12299448..12299472 (25 bp)
GCTTCCAACTCTGCTGTGAATTTCA
LOC_Os03g21550
Os.7540.1.S2_at--645--5211Chr03:12299465..12299489 (25 bp)
GAATTTCAGTTTTATCCGAGACCAT
LOC_Os03g21550
Target Sequence 
GAAGAACTGTTATGAGGCCTCCTCAAGTTCTTAGGGAAGGCACAAAGAAGACAGTTTTTGTGAACTTCATGGATTTGTGC
AAAACAATGCATAGGCAACCTGAACATGTGATGATGTTTTTACTTGCTGAGATGGGAACAAGTGGATCCCTTGATGGGCA
ACAAAGATTGGTTATAAAAGGAAGATTTGCTCCTAAAAACTTTGAAGCCATACTTAGGAGATATATCAATGAGTATGTCA
TATGCAATGGGTGCAAGAGTCCTGATACCATCCTTTCTAAGGAGAATAGGTTGTTCTTCCTTCGTTGCGAACAGTGTGGT
TCTTCAAGATCTGTTGCTCCTATCAAGGCTGGATTCGTTGCCCAAGTTGGTCGTCGGAAGGCTGGAACCTAAGTTAAACG
TCCACCCTGCTCAGAGCCTCGGATACACTCCCCAATCATCGCTACAAAAANCCTAATTTGCCGATTTACAACAATTATTG
TCCAGTTTTCACTGTGTCTACACCGTTTTGTGTATTTGTGACCGTAACTCTGCTTCCAACTCTGCTGTGAATTTCAGTTT
TATCCGAGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7540.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis