Browse Element(s) Details


OsAffx.12971.1.S1_x_at

Description tigr:9631.m02147
TID=OsAffx.12971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2150011/11expressed protein
LOC_Os09g085601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12971.1.S1_x_at--259--2271Chr03:12260199..12260223 (25 bp)
AAATCACCAATTGGGGCTGTCAAAG
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--927--7631Chr03:12260241..12260265 (25 bp)
GGGAGCCAATCAATGTGTCCCTCGA
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--991--3171Chr03:12260247..12260271 (25 bp)
CAATCAATGTGTCCCTCGACGAAAT
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--1010--7411Chr03:12260255..12260279 (25 bp)
GTGTCCCTCGACGAAATAATCCATG
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--147--4292Chr09:4465781..4465801 (21 bp)
CCTCGACGAAATAATCCATGGGAAG
LOC_Os09g08560
OsAffx.12971.1.S1_x_at--771--5311Chr03:12260281..12260305 (25 bp)
GAAGGGTATGAACACGAAGCACGCC
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--771--6911Chr03:12260286..12260310 (25 bp)
GTATGAACACGAAGCACGCCATGAA
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--215--5391Chr03:12260296..12260320 (25 bp)
GAAGCACGCCATGAAAATGTCGATC
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--32--1831Chr03:12260301..12260325 (25 bp)
ACGCCATGAAAATGTCGATCGACAA
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--22--7551Chr03:12260366..12260390 (25 bp)
GTGGCGGTCGGGAGCAGCGGAGGTG
LOC_Os03g21500
OsAffx.12971.1.S1_x_at--871--7471Chr03:12260410..12260434 (25 bp)
GTGGTGGAAGCGACGCCAACTTCGA
LOC_Os03g21500
Target Sequence 
AAATCACCAATTGGGGCTGTCAAAGGACGGCGAGAAGATGGGGGGAGCCAATCAATGTGTCCCTCGACGAAATAATCCAT
GGGAAGGGTATGAACACGAAGCACGCCATGAAAATGTCGATCGACAAGGACGATGAAGAGGCCAAGATGACGATGGCGGC
GGCGGCGGTGGCGGTCGGGAGCAGCGGAGGTGGCGGTGGGGAGCAGCGACGGTGGTGGAAGCGACGCCAACTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12971.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis