Browse Element(s) Details


OsAffx.3289.1.S1_at

Description tigr:9631.m02141
TID=OsAffx.3289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 50925-54045
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2145011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21400OsAffx.25179.1.S1_at11/113+12213943..12216581Cytochrome P450 family protein, expressed
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3289.1.S1_at--1012--9111Chr03:12241886..12241910 (25 bp)
TGCTGATCGGCAGGCCGGCGTTCAT
LOC_Os03g21450
OsAffx.3289.1.S1_at--420--4431Chr03:12241934..12241958 (25 bp)
GCCATGAGCGCCAGGAGAGCAGCTC
LOC_Os03g21450
OsAffx.3289.1.S1_at--363--5071Chr03:12241952..12241976 (25 bp)
GCAGCTCAAAGCAGGGACACGATCA
LOC_Os03g21450
OsAffx.3289.1.S1_at--963--8131Chr03:12241966..12241990 (25 bp)
GGACACGATCAGAAACCAGCTGTGA
LOC_Os03g21450
OsAffx.3289.1.S1_at--420--2371Chr03:12241978..12242002 (25 bp)
AAACCAGCTGTGACCAGAGCCGGTG
LOC_Os03g21450
OsAffx.3289.1.S1_at--948--9792Chr04:21580147..21580169 (22 bp)
TAACGGCGGCCAAGCCAGGGAAGAA
NONE
OsAffx.3289.1.S1_at--438--2871Chr03:12242056..12242080 (25 bp)
AAGGGCAGTGCCAGCAAGCCAGCCG
LOC_Os03g21450
OsAffx.3289.1.S1_at--720--8652Chr04:21580250..21580274 (25 bp)
TGGGCTTCAGCCAGTTCGCCGGCTC
NONE
OsAffx.3289.1.S1_at--1053--9391Chr03:12242158..12242182 (25 bp)
TCGTCCTCCCAACCGTTCAAAGTGA
LOC_Os03g21450
OsAffx.3289.1.S1_at--996--9271Chr03:12242164..12242188 (25 bp)
TCCCAACCGTTCAAAGTGACGCCTA
LOC_Os03g21450
OsAffx.3289.1.S1_at--682--1111Chr03:12242178..12242202 (25 bp)
AGTGACGCCTACCACTCCAAATGTT
LOC_Os03g21450
Target Sequence 
TGCTGATCGGCAGGCCGGCGTTCATGGAGAGAGCCAGGAGAGTGCTCGGCCATGAGCGCCAGGAGAGCAGCTCAAAGCAG
GGACACGATCAGAAACCAGCTGTGACCAGAGCCGGTGACGACGACGGCGGCGCGAAGGCCGGCGTAACGGCGGCCAAGCC
AGGGAAGAAGAAGGGCAGTGCCAGCAAGCCAGCCGCCGTCGAGTTCGGGCCATTCGCGCCGCCCAAGCTGGTCATCCCCG
GCCGGCAGCTGGGCTTCAGCCAGTTCGCCGGCTCGTCCTCCCAACCGTTCAAAGTGACGCCTACCACTCCAAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis