Browse Element(s) Details


OsAffx.25179.1.S1_at

Description tigr:9631.m02136
TID=OsAffx.25179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome P450, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2140011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21350NANA3+12188447..12192447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360Os.45173.1.S1_x_at5/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.29607.2.S1_s_at4/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.20877.1.S1_at1/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21370Os.19817.1.S1_at10/113+12198664..12202070expressed protein
LOC_Os03g21380Os.16401.1.S2_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21380Os.16401.1.S1_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21390Os.22778.1.S1_at9/113+12210121..12211813expressed protein
LOC_Os03g21400OsAffx.25179.1.S1_at11/113+12213943..12216581Cytochrome P450 family protein, expressed
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25179.1.S1_at--595--7331Chr03:12214791..12215027 (25 bp)
GTGCAGGAGTTGACAATGGTGATCC
LOC_Os03g21400
OsAffx.25179.1.S1_at--214--7751Chr03:12214774..12214798 (25 bp)
GGTGATCCAGGAGACTTTGCGTTTG
LOC_Os03g21400
OsAffx.25179.1.S1_at--448--1411Chr03:12214763..12214787 (25 bp)
AGACTTTGCGTTTGTACCCAGCTGG
LOC_Os03g21400
OsAffx.25179.1.S1_at--832--3391Chr03:12214745..12214769 (25 bp)
CAGCTGGCGCCTTTGTATCAAGGCA
LOC_Os03g21400
OsAffx.25179.1.S1_at--814--3191Chr03:12214727..12214751 (25 bp)
CAAGGCAGGCCCTTCAGGAACTGAA
LOC_Os03g21400
OsAffx.25179.1.S1_at--782--9531Chr03:12214667..12214691 (25 bp)
TCTACATCCCTGTTTCCACAATGCA
LOC_Os03g21400
OsAffx.25179.1.S1_at--931--3871Chr03:12214658..12214682 (25 bp)
CTGTTTCCACAATGCACCTTGATCC
LOC_Os03g21400
OsAffx.25179.1.S1_at--731--10711Chr03:12214514..12214538 (25 bp)
TTGCTATGGCTGAACTCAAAACCCT
LOC_Os03g21400
OsAffx.25179.1.S1_at--228--9691Chr03:12214499..12214523 (25 bp)
TCAAAACCCTAATTTCCCTCATCAT
LOC_Os03g21400
OsAffx.25179.1.S1_at--625--8771Chr03:12214465..12214489 (25 bp)
TGTATTGAAGCTCTCGCCAAACTAT
LOC_Os03g21400
OsAffx.25179.1.S1_at--518--5511Chr03:12213979..12214003 (25 bp)
GAAAATTCCATTTTCCTCCAGTGGA
LOC_Os03g21400
Target Sequence 
GTGCAGGAGTTGACAATGGTGATCCAGGAGACTTTGCGTTTGTACCCAGCTGGCGCCTTTGTATCAAGGCAGGCCCTTCA
GGAACTGAAGTTTGGGGGTGTACATATACCAAAAGGTGTCAACATCTACATCCCTGTTTCCACAATGCACCTTGATCCCA
ACCTGTGGGGTCCAGATGTGAAAGAATTCAACCCAGAGCGCTTCTCCAATGCACAACCCCAGCTACATTCCTACTTGCCA
TTTGGCGCTGGTGCTCGAACTTGCCTTGGTCAGGGCTTTGCTATGGCTGAACTCAAAACCCTAATTTCCCTCATCATCTC
CAAGTTTGTATTGAAGCTCTCGCCAAACTATGAGCATTCTCCAACACTGAAACTCATTGTGGAACCAGAATTTGGTGTGG
ACCTCAGTTTAACGAGAGTGCAAGGGAAGATGTCAATGGACAAATGGTTTATGTCAACATCATATGGTTATGTTGTGAGT
ACCAAAAGGCAACATATACTGGAAACATTAAAGAAAATTCCATTTTCCTCCAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis