Browse Element(s) Details


Os.22778.1.S1_at

Description gb:AK099570.1
DB_XREF= gi:32984779
TID=Os.22778.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034O05, full insert sequence.
FL= gb:AK099570.1 gb:AK063044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g213909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21340OsAffx.20730.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.20733.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.1197.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.10020.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.9790.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21350NANA3+12188447..12192447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360Os.45173.1.S1_x_at5/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.29607.2.S1_s_at4/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.20877.1.S1_at1/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21370Os.19817.1.S1_at10/113+12198664..12202070expressed protein
LOC_Os03g21380Os.16401.1.S2_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21380Os.16401.1.S1_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21390Os.22778.1.S1_at9/113+12210121..12211813expressed protein
LOC_Os03g21400OsAffx.25179.1.S1_at11/113+12213943..12216581Cytochrome P450 family protein, expressed
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22778.1.S1_at--633--331Chr03:12210091..12210115 (25 bp)
ATACATCGGACCAGTGTGCCTCGAG
NONE
Os.22778.1.S1_at--998--2451Chr03:12210127..12210151 (25 bp)
AACAACAGGTCGAGCAAGCGGCGAA
LOC_Os03g21390
Os.22778.1.S1_at--827--5491Chr03:12210154..12210178 (25 bp)
GAAAAGAAGCGGAGATCGTCCCCTC
LOC_Os03g21390
Os.22778.1.S1_at--1058--5731Chr03:12210188..12210212 (25 bp)
GACTGGACGCATATGCGCCACGGCT
LOC_Os03g21390
Os.22778.1.S1_at--430--4171NONE
CGCCACCACGAGGAATGTTCTTCTG
NONE
Os.22778.1.S1_at--963--5271Chr03:12211472..12211496 (25 bp)
GAATGTTCTTCTGGCCGTTCCTAGA
LOC_Os03g21390
Os.22778.1.S1_at--715--6691Chr03:12211488..12211512 (25 bp)
GTTCCTAGAGGGTCTTTTGATTCTT
LOC_Os03g21390
Os.22778.1.S1_at--615--6571Chr03:12211506..12211530 (25 bp)
GATTCTTGCAAATGCATTGGCGATA
LOC_Os03g21390
Os.22778.1.S1_at--429--7351Chr03:12211690..12211714 (25 bp)
GTGAAGTTGGTGTCAGGCTGATACT
LOC_Os03g21390
Os.22778.1.S1_at--1019--3432Chr03:12211725..12211749 (25 bp)
CAGTTGTTGGGCTTGATTGATTTCA
LOC_Os03g21390
Os.22778.1.S1_at--632--191Chr03:12211784..12211808 (25 bp)
ATTTCTGCAGCTATATTAATTTGTC
LOC_Os03g21390
Target Sequence 
ATACATCGGACCAGTGTGCCTCGAGACGAAGNAAAGAACAACAGGTCGAGCAAGCGGCGAAGGGAAAAGAAGCGGAGATC
GTCCCCTCCCCGCCGCCGACTGGACGCATATGCGCCACGGCTGCCGGTGAGCTTCCCCGCCGGCGACGAGTGGACCTCGC
CCCACGCCCGGCTAGATCCGGTGCCACCCCCGCCACCACGAGGAATGTTCTTCTGGCCGTTCCTAGAGGGTCTTTTGATT
CTTGCAAATGCATTGGCGATACTAAATGAAGACCGCTTTCTTGCACCCAGAGGATGGAGCATGTCTGAAGTCTCAGGAAA
TGGACGATCAAAGTCATTGAAGGGTCAGATTGTAGGACTCATATATGCCACACAGTTCTTTAGGATGCCGTTGATAGCAC
TTAATGTTCTTATCATTGTTGTGAAGTTGGTGTCAGGCTGATACTATGAAGGTTTCAGTTGTTGGGCTTGATTGATTTCA
ATTTCAATGTGATGTAAAAGTATTCACGCTAAATATTTCTGCAGCTATATTAATTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis