Browse Element(s) Details


OsAffx.12969.1.S1_at

Description tigr:9631.m02140
TID=OsAffx.12969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2144011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21390Os.22778.1.S1_at9/113+12210121..12211813expressed protein
LOC_Os03g21400OsAffx.25179.1.S1_at11/113+12213943..12216581Cytochrome P450 family protein, expressed
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12969.1.S1_at--849--8291Chr03:12235039..12235063 (25 bp)
GGCTTCTCCAGCGTAGATCAAGGTG
LOC_Os03g21440
OsAffx.12969.1.S1_at--835--8271Chr03:12235064..12235088 (25 bp)
GGCGGTTAGGGCACCATCGACAGCC
LOC_Os03g21440
OsAffx.12969.1.S1_at--1035--531Chr03:12235121..12235145 (25 bp)
ATCCCTCACCAAGAAAATCTGCATT
LOC_Os03g21440
OsAffx.12969.1.S1_at--695--6231Chr03:12235191..12235215 (25 bp)
GATGGCGACAGCGAGATCCACAAGA
LOC_Os03g21440
OsAffx.12969.1.S1_at--531--572Chr05:14912127..14912151 (25 bp)
ATCCACAAGACGGTGACCACGAGCT
NONE
OsAffx.12969.1.S1_at--383--5951Chr03:12235250..12235274 (25 bp)
GAGAAGGCCACCATTGGGCTACTGC
LOC_Os03g21440
OsAffx.12969.1.S1_at--771--7391Chr03:12235332..12235356 (25 bp)
GTGATGTTGCCGACGCAACCCAAGT
LOC_Os03g21440
OsAffx.12969.1.S1_at--930--4371Chr03:12235351..12235375 (25 bp)
CCAAGTGCTCCACGACCATGAGGAT
LOC_Os03g21440
OsAffx.12969.1.S1_at--608--1391Chr03:12235561..12235585 (25 bp)
AGACGTGGCACCTATGGCTCATCTT
LOC_Os03g21440
OsAffx.12969.1.S1_at--134--871Chr03:12235515..12235539 (25 bp)
ATGGCTCATCTTGTCTCCGCAATCT
LOC_Os03g21440
OsAffx.12969.1.S1_at--669--9291Chr03:12235530..12235554 (25 bp)
TCCGCAATCTTCATAGGGCAACGAG
LOC_Os03g21440
Target Sequence 
GGCTTCTCCAGCGTAGATCAAGGTGGGCGGTTAGGGCACCATCGACAGCCCAACAAGCTCCCTTCACCTATCCCCAACCT
CCATCCCTCACCAAGAAAATCTGCATTCACCACCTCCACTCCCCTGCTGGCACCCATCTCCCTTCACCACTCGATGGCGA
CAGCGAGATCCACAAGACGGTGACCACGAGCTGTGGATGGGCTGAGGGTTTGAGAAGGCCACCATTGGGCTACTGCGGCG
GACGGGTCGAGGCCACCGCCACCTTCTCGAGCTCATACTCATCGTCCACGGCCGTGATGTTGCCGACGCAACCCAAGTGC
TCCACGACCATGAGGATGACGCCCGGTCACCCTCCTCCCCTAGCCAATGAGGTTGGCGGCGTGGAGCGCAGGGCAACGAG
AATGGCAGACGTGGCACCTATGGCTCATCTTGTCTCCGCAATCTTCATAGGGCAACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis