Browse Element(s) Details


Os.6480.1.S1_at

Description gb:AK103161.1
DB_XREF= gi:32988370
TID=Os.6480.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121D04, full insert sequence.
FL= gb:AK103161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2146011/11Hydroxyacylglutathione hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019243biological_processmethylglyoxal catabolism to D-lactate
GO:0005737cellular_componentcytoplasm
GO:0004416molecular_functionhydroxyacylglutathione hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6480.1.S1_at--409--2251Chr03:12243084..12243108 (25 bp)
AAATTCATACTGACGGTCGAGCCAG
LOC_Os03g21460
Os.6480.1.S1_at--1072--10531Chr03:12242955..12242979 (25 bp)
TTCATGCGTGTTGATCTGCCAGAAA
LOC_Os03g21460
Os.6480.1.S1_at--110--1211Chr03:12242697..12242721 (25 bp)
AGTTTGGTGCCAAGTCGCCAGTTGA
LOC_Os03g21460
Os.6480.1.S1_at--996--4331Chr03:12242680..12242704 (25 bp)
CCAGTTGAGGCCCTGCGAGAAGTTA
LOC_Os03g21460
Os.6480.1.S1_at--279--6751Chr03:12242631..12242655 (25 bp)
GTTAATACCGATGCAACTGTTACTC
LOC_Os03g21460
Os.6480.1.S1_at--213--2571Chr03:12242617..12242641 (25 bp)
AACTGTTACTCTTCGTCTGATGGTC
LOC_Os03g21460
Os.6480.1.S1_at--741--9011Chr03:12242571..12242595 (25 bp)
TGCAGAAAGCTTACCCTGTAGGTGG
LOC_Os03g21460
Os.6480.1.S1_at--1161--10451Chr03:12242543..12242567 (25 bp)
TTACTGCCGTGCAACGCTTTAAGAG
LOC_Os03g21460
Os.6480.1.S1_at--1037--611Chr03:12242438..12242462 (25 bp)
ATGCTGGTCTTGTCTATCACTGTAC
LOC_Os03g21460
Os.6480.1.S1_at--500--9691Chr03:12242422..12242446 (25 bp)
TCACTGTACTACATGAGCTACGTAT
LOC_Os03g21460
Os.6480.1.S1_at--107--6951Chr03:12242349..12242373 (25 bp)
GTAGTAGTCATCCTCCAGTTTACAT
LOC_Os03g21460
Target Sequence 
AAATTCATACTGACGGTCGAGCCAGATAACGAAAAAGTGAAGCAGAAACTAGAATGGGCTCAAAAGCAGCGTGAAGCAAA
CCAACCAACTATTNCCATCAACTATAGGAGAGGAATTTGAGACAAACACCNTTCATGCGTGTTGATCTGCCAGAAATACA
GGCAAAGTTTGGTGCCAAGTCGCCAGTTGAGGCCCTGCGAGAAGTTAGGAAGACCAAGGATAACTGGAAAAGTTAATACC
GATGCAACTGTTACTCTTCGTCTGATGGTCCGGTCTCTCGAGGTTAGCTAATGCAGAAAGCTTACCCTGTAGGTGGGGCT
TACTGCCGTGCAACGCTTTAAGAGCGATGGTGTTAGGAAGAGTTTTAAGCTATAAATAAGCTCCATGTTAATGTTCAAGG
AGACATCATCAGATGTGCATGTTAATGCTGGTCTTGTCTATCACTGTACTACATGAGCTACGTATGAATTTCGGAGTTGG
TCTTGTTTAACTTTGAAAAGTCGAAAACGAGAGGTAGTAGTCATCCTCCAGTTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis