Browse Element(s) Details


Os.4959.1.S1_at

Description gb:AK072820.1
DB_XREF= gi:32982843
TID=Os.4959.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135H16, full insert sequence.
FL= gb:AK072820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2149011/11ATP-dependent transporter ycf16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009507cellular_componentchloroplast
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4959.1.S1_at--128--10251Chr03:12255601..12255625 (25 bp)
TTTGTTTCCTCCTATACCTGAATAG
LOC_Os03g21490
Os.4959.1.S1_at--1160--6831Chr03:12255598..12255622 (25 bp)
GTTTCCTCCTATACCTGAATAGTTT
LOC_Os03g21490
Os.4959.1.S1_at--391--311Chr03:12255588..12255612 (25 bp)
ATACCTGAATAGTTTTCTCATGTAC
LOC_Os03g21490
Os.4959.1.S1_at--633--5231Chr03:12255582..12255606 (25 bp)
GAATAGTTTTCTCATGTACTTACAT
LOC_Os03g21490
Os.4959.1.S1_at--347--9531Chr03:12255573..12255597 (25 bp)
TCTCATGTACTTACATTGTGAACAG
LOC_Os03g21490
Os.4959.1.S1_at--281--3611Chr03:12255560..12255584 (25 bp)
CATTGTGAACAGTATCAGTAATACC
LOC_Os03g21490
Os.4959.1.S1_at--924--10011Chr03:12255500..12255524 (25 bp)
TAGATTGGTATCTGAATAAGTGAAT
LOC_Os03g21490
Os.4959.1.S1_at--254--5251Chr03:12255479..12255503 (25 bp)
GAATCAGGTTCATATGGATTTGACT
LOC_Os03g21490
Os.4959.1.S1_at--586--8571Chr03:12255465..12255489 (25 bp)
TGGATTTGACTGATTTCTGATGCTT
LOC_Os03g21490
Os.4959.1.S1_at--853--6331Chr03:12255447..12255471 (25 bp)
GATGCTTTATTGCAGATCAAATACT
LOC_Os03g21490
Os.4959.1.S1_at--603--4891Chr03:12255444..12255468 (25 bp)
GCTTTATTGCAGATCAAATACTTGA
LOC_Os03g21490
Target Sequence 
TTTGTTTCCTCCTATACCTGAATAGTTTTCTCATGTACTTACATTGTGAACAGTATCAGTAATACCGCCNGATTAAAGAG
AATAATAATGAAAATATGTTTTAGATTGGTATCTGAATAAGTGAATCAGGTTCATATGGATTTGACTGATTTCTGATGCT
TTATTGCAGATCAAATACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis