Browse Element(s) Details


OsAffx.25182.1.S1_s_at

Description tigr:9631.m02143
TID=OsAffx.25182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal L10, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2147010/1160S ribosomal protein L10, putative, expressed
LOC_Os10g307501/11appr-1-p processing enzyme family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25182.1.S1_s_at--921--1331Chr03:12249158..12249182 (25 bp)
AGAGGGTCATCTTCAGCGCCAAGTG
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--1094--6751Chr03:12249025..12249049 (25 bp)
GTTCAAGCGCGACGAGTACCTCAAG
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--276--2611NONE
AACGCCAAGTTGCTAACTCGGCACG
NONE
OsAffx.25182.1.S1_s_at--11--2551Chr03:12248374..12248398 (25 bp)
AACTCGGCACGGATCGGTTGCTGAT
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--686--9291Chr03:12248319..12248343 (25 bp)
TCCGTTGCAGGCTCAGACGCATGAG
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--249--711Chr03:12248299..12248323 (25 bp)
ATGAGGAGTGCTTTCACTGTCCATC
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--371--9051Chr03:12248253..12248277 (25 bp)
TGCAGTGTCTGATCGAGCTCTGTTA
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--156--351Chr03:12248189..12248213 (25 bp)
ATAAATGACGGTGACTGTGTGCAGT
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--1134--8652Chr10:15689779..15689882 (25 bp)
TGTGTGCAGTAAGCCTTGTTGGTCT
LOC_Os10g30750
OsAffx.25182.1.S1_s_at--1060--10771Chr03:12248159..12248183 (25 bp)
TTGTTGGTCTTTGGTAGCACGGTTC
LOC_Os03g21470
OsAffx.25182.1.S1_s_at--85--4991Chr03:12248143..12248167 (25 bp)
GCACGGTTCGTGCTGTAAATTAACT
LOC_Os03g21470
Target Sequence 
AGAGGGTCATCTTCAGCGCCAAGTGGGGATTCACCAGGTTCAAGCGCGACGAGTACCTCAAGCTTAAGAGCGAGGGACGC
ATCGTGCCCGATGGCGTCAACGCCAAGTTGCTAACTCGGCACGGATCGGTTGCTGATCGCCAGCCCGGGAGAGGGGTCTT
CCCACCCTCCGTTGCAGGCTCAGACGCATGAGGAGTGCTTTCACTGTCCATCTCATTGGAGGTGGTTGCAGGCTGCAGTG
TCTGATCGAGCTCTGTTAAAAGAGTGACATGTCATGTGTATATATTATGGTAGTGGAATAAATGACGGTGACTGTGTGCA
GTAAGCCTTGTTGGTCTTTGGTAGCACGGTTCGTGCTGTAAATTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25182.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis