Browse Element(s) Details


Os.16401.1.S2_at

Description gb:AK109470.1
DB_XREF= gi:32994679
TID=Os.16401.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E03, full insert sequence.
FL= gb:AK109470.1 gb:AK109541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2138011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21310Os.56077.1.S1_x_at1/113+12169398..12177969Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g21320NANA3+12178858..12180320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21330OsAffx.29607.5.S1_x_at11/113+12182858..12184921transposon protein, putative, unclassified
LOC_Os03g21330OsAffx.29607.3.S1_x_at9/113+12182858..12184921transposon protein, putative, unclassified
LOC_Os03g21340OsAffx.20730.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.20733.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.1197.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.10020.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21340OsAffx.9790.1.S1_x_at1/113+12187101..12187454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21350NANA3+12188447..12192447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360Os.45173.1.S1_x_at5/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.29607.2.S1_s_at4/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21360OsAffx.20877.1.S1_at1/113+12192836..12197637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g21370Os.19817.1.S1_at10/113+12198664..12202070expressed protein
LOC_Os03g21380Os.16401.1.S2_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21380Os.16401.1.S1_at11/113+12202754..12204929EF hand family protein, expressed
LOC_Os03g21390Os.22778.1.S1_at9/113+12210121..12211813expressed protein
LOC_Os03g21400OsAffx.25179.1.S1_at11/113+12213943..12216581Cytochrome P450 family protein, expressed
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16401.1.S2_at--10--6211Chr03:12203328..12203352 (25 bp)
GAGGCATAGAGTTCTCACATGGACC
LOC_Os03g21380
Os.16401.1.S2_at--739--2111Chr03:12203312..12203336 (25 bp)
ACATGGACCATTATCTTCTTGTTCT
LOC_Os03g21380
Os.16401.1.S2_at--326--4391Chr03:12203242..12203266 (25 bp)
GCCAACCTAACGTCTGCTTATGAAT
LOC_Os03g21380
Os.16401.1.S2_at--1075--4871Chr03:12203227..12203251 (25 bp)
GCTTATGAATACCTACCACATGTTA
LOC_Os03g21380
Os.16401.1.S2_at--476--8172Chr06:9358461..9358514 (23 bp)
GGAACTTGCATCAGCATGTTTGCAT
NONE
Os.16401.1.S2_at--60--151Chr03:12203157..12203181 (25 bp)
ATTACGCATTGCTTTCTTATTATAC
LOC_Os03g21380
Os.16401.1.S2_at--368--7011Chr03:12203090..12203114 (25 bp)
GTACTCCATTGATTTGCAGATTCTG
LOC_Os03g21380
Os.16401.1.S2_at--716--6811Chr03:12202927..12202951 (25 bp)
GTTTTACCCTTCACTAATCTAGGCA
LOC_Os03g21380
Os.16401.1.S2_at--616--9991Chr03:12202900..12202924 (25 bp)
TAGCCAGATAGGTCTTGTGCGCATC
LOC_Os03g21380
Os.16401.1.S2_at--237--492Chr11:5221231..5221270 (24 bp)
ATCTGTGTCATTGTGTTCCTCCTAA
NONE
Os.16401.1.S2_at--499--6691Chr03:12202864..12202888 (25 bp)
GTTCCTCCTAATCCAATAAGCTTTC
LOC_Os03g21380
Target Sequence 
GAGGCATAGAGTTCTCACATGGACCATTATCTTCTTGTTCTTTCATTAGTACAGTAGTGTACGTTTAAGCACATGAAGAT
TGCTAGGCCAACCTAACGTCTGCTTATGAATACCTACCACATGTTAATAGGAACTTGCATCAGCATGTTTGCATGCTCTA
CACTTTATATGATTACGCATTGCTTTCTTATTATACATGTTTGGCTTTAAACCAAGTTTTTATATGCCTTCAAGTAATGT
ACTCCATTGATTTGCAGATTCTGAAGCATCTGAAGATTGATCTAGGANCTATAACATTACCCTTGGATTNGTTTCAGTCA
ATACTGATTCAGTGNTTGTTGTATGTTGGTCATAATGCAGGTAATGATGACTGTAATTTCAGTACTGTTTGTTTAACTCT
TGGTTTTACCCTTCACTAATCTAGGCATGTAGCCAGATAGGTCTTGTGCGCATCTGTGTCATTGTGTTCCTCCTAATCCA
ATAAGCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16401.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis