Browse Element(s) Details


Os.4041.1.S1_at

Description gb:AK100805.1
DB_XREF= gi:32986014
TID=Os.4041.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative shock protein SRC2 (P0560B06.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121K24, full insert sequence.
FL= gb:AK100805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2719011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA
LOC_Os01g27230Os.27098.2.A1_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27230Os.27098.2.A1_s_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4041.1.S1_at--773--751Chr01:15487916..15487940 (25 bp)
ATGTACGCGCAGGACTCTGATGAGA
LOC_Os01g27190
Os.4041.1.S1_at--849--6971Chr01:15488038..15488062 (25 bp)
GTACGGAGGAGGGTACCCACCGCAT
LOC_Os01g27190
Os.4041.1.S1_at--82--1511Chr01:15488064..15488088 (25 bp)
AGCAGCAGTACGGTTACGCGGGTCA
LOC_Os01g27190
Os.4041.1.S1_at--153--5771Chr01:15488128..15488152 (25 bp)
GACGTACAGCTACGCGGCGGCACAA
LOC_Os01g27190
Os.4041.1.S1_at--117--1851Chr01:15488176..15488200 (25 bp)
ACGAATGGGCATGGGCCTCGGACTC
LOC_Os01g27190
Os.4041.1.S1_at--731--4491Chr01:15488279..15488303 (25 bp)
GCCGGGTTCAACGACGCACTGGAAT
LOC_Os01g27190
Os.4041.1.S1_at--1095--5071Chr01:15488294..15488318 (25 bp)
GCACTGGAATTTTAGGTCTTTTGTC
LOC_Os01g27190
Os.4041.1.S1_at--465--3671Chr01:15488311..15488335 (25 bp)
CTTTTGTCGTGTTTTCCTGTGTACA
LOC_Os01g27190
Os.4041.1.S1_at--208--7452Chr01:15488329..15488353 (25 bp)
GTGTACATGGGCAATGCACCTGTAT
LOC_Os01g27190
Os.4041.1.S1_at--928--1411Chr01:15488372..15488396 (25 bp)
AGAAATTTCACGATCCAACAATGGG
LOC_Os01g27190
Os.4041.1.S1_at--681--2351Chr01:15488397..15488421 (25 bp)
AAACGCGATGTCAGGCCACAAGGGT
LOC_Os01g27190
Target Sequence 
ATGTACGCGCAGGACTCTGATGAGAAGGCGACGGAGAAGAGCGTGTCGTCGCCGGTCACCGCCTACCCGCCGCCGTCGAA
CGCCGTGGTAGCGCACCCGCCGGTCGTGCCGTACGGCGCGCCGTACGGAGGAGGGTACCCACCGCATCAGCAGCAGTACG
GTTACGCGGGTCAGCCGCCGTACGCGTACAACGCCGGCCCACCGCCGCCGGCGACGTACAGCTACGCGGCGGCACAACAG
CCGGCGGCGAGGAAAGGTGGACGAATGGGCATGGGCCTCGGACTCGGGCTCCTCGGCGGCGCGGTCGGCGGGATGATGCT
CGGGGAAATGGTCGGCGACATGGAGGCTGACGCCGCCTACGACGCCGGGTTCAACGACGCACTGGAATTTTAGGTCTTTT
GTCGTGTTTTCCTGTGTACATGGGCAATGCACCTGTATAAATTTGTCACGTGCATAAGAAATTTCACGATCCAACAATGG
GAAACGCGATGTCAGGCCACAAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis