Browse Element(s) Details


Os.27098.2.A1_at

Description gb:AK100034.1
DB_XREF= gi:32985243
TID=Os.27098.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.13 (P0452F10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149N02, full insert sequence.
FL= gb:AK100034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2723011/1112-oxophytodienoate reductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA
LOC_Os01g27230Os.27098.2.A1_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27230Os.27098.2.A1_s_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27240Os.50513.1.S1_at11/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27240Os.27098.2.A1_s_at1/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27250Os.35344.3.S1_x_at11/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_x_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.1.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250Os.35344.18.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.3.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_at8/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.31552.2.S1_at1/111+15524331..15531849transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27098.2.A1_at--894--4571Chr01:15512536..15512560 (25 bp)
GCGCTGCGCGTGATCGGCCTCATGA
LOC_Os01g27230
Os.27098.2.A1_at--8--4791Chr01:15512534..15512558 (25 bp)
GCTGCGCGTGATCGGCCTCATGAAC
LOC_Os01g27230
Os.27098.2.A1_at--1128--4651Chr01:15512529..15512553 (25 bp)
GCGTGATCGGCCTCATGAACAACCT
LOC_Os01g27230
Os.27098.2.A1_at--102--3831Chr01:15512492..15512516 (25 bp)
CTGCCACATGATCGAGCCGAGAATG
LOC_Os01g27230
Os.27098.2.A1_at--243--711Chr01:15512485..15512509 (25 bp)
ATGATCGAGCCGAGAATGTGCGTCG
LOC_Os01g27230
Os.27098.2.A1_at--847--1671Chr01:15512478..15512502 (25 bp)
AGCCGAGAATGTGCGTCGGCGCCGG
LOC_Os01g27230
Os.27098.2.A1_at--567--1491Chr01:15512443..15512467 (25 bp)
AGCAAGCCGGTGATCGCGCACGGCC
LOC_Os01g27230
Os.27098.2.A1_at--495--5471Chr01:15512161..15512185 (25 bp)
GAACTAGCAACTCGTTGAGTTCTTC
LOC_Os01g27230
Os.27098.2.A1_at--188--9991Chr01:15512157..15512181 (25 bp)
TAGCAACTCGTTGAGTTCTTCCGTC
LOC_Os01g27230
Os.27098.2.A1_at--597--3231Chr01:15512154..15512178 (25 bp)
CAACTCGTTGAGTTCTTCCGTCCCA
LOC_Os01g27230
Os.27098.2.A1_at--164--3631Chr01:15512140..15512164 (25 bp)
CTTCCGTCCCAAAGACCGACCAGAT
LOC_Os01g27230
Target Sequence 
GCGCTGCGCGTGATCGGCCTCATGAACAACCTCGGCGTCCTCTACTGCCACATGATCGAGCCGAGAATGTGCGTCGGCGC
CGGCGAGGACGGCAGCAAGCCGGTGATCGCGCACGGCCGCCTGCTTCCGTTCAGGAAGGCGTTCCGGGGCACGTTCATGG
TGAACGGTGGGTACGACCGGGANGAAGGNGACAAGGCGGTCGCCGACGGCTACGCCGACCTGGTGGCGTACGGGCGGNTG
TTCNTGGCCAACCCTGACCTNCCGGAGAGGTTCAGGAGGAAGGCAGGTCTGAACAAGTATGACAGGAGCACGTTCTATAC
CTCTGATCCTGTGGTGGGNTACACGGACTACCCGTTTCTGGATGATCAGAATTCAGAACTAGCAACTCGTTGAGTTCTTC
CGTCCCAAAGACCGACCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27098.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis