Browse Element(s) Details


Os.27098.2.A1_s_at

Description gb:AK100034.1
DB_XREF= gi:32985243
TID=Os.27098.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0452F10.13 (P0452F10.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149N02, full insert sequence.
FL= gb:AK100034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2723011/1112-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g272401/11oxidoreductase, FAD/FMN-binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA
LOC_Os01g27230Os.27098.2.A1_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27230Os.27098.2.A1_s_at11/111+15511948..1551516712-oxophytodienoate reductase 1, putative, expressed
LOC_Os01g27240Os.50513.1.S1_at11/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27240Os.27098.2.A1_s_at1/111+15519726..15522561oxidoreductase, FAD/FMN-binding family protein, expressed
LOC_Os01g27250Os.35344.3.S1_x_at11/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_x_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.1.S1_s_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.5.S1_at10/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250Os.35344.18.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.3.S1_x_at9/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.22940.2.S1_at8/111+15524331..15531849transposon protein, putative, Mutator sub-class
LOC_Os01g27250OsAffx.31552.2.S1_at1/111+15524331..15531849transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27098.2.A1_s_at--970--6691Chr01:15512396..15512420 (25 bp)
GTTCCGGGGCACGTTCATGGTGAAC
LOC_Os01g27230
Os.27098.2.A1_s_at--386--1932Chr01:15512331..15512355 (25 bp)
ACGGCTACGCCGACCTGGTGGCGTA
LOC_Os01g27230
Os.27098.2.A1_s_at--454--8951Chr01:15512237..15512261 (25 bp)
TGACAGGAGCACGTTCTATACCTCT
LOC_Os01g27230
Os.27098.2.A1_s_at--637--971Chr01:15512233..15512257 (25 bp)
AGGAGCACGTTCTATACCTCTGATC
LOC_Os01g27230
Os.27098.2.A1_s_at--76--1891Chr01:15512227..15512251 (25 bp)
ACGTTCTATACCTCTGATCCTGTGG
LOC_Os01g27230
Os.27098.2.A1_s_at--453--9551Chr01:15512223..15512247 (25 bp)
TCTATACCTCTGATCCTGTGGTGGG
LOC_Os01g27230
Os.27098.2.A1_s_at--262--8131Chr01:15512192..15512216 (25 bp)
GGACTACCCGTTTCTGGATGATCAG
LOC_Os01g27230
Os.27098.2.A1_s_at--235--1811Chr01:15512187..15512211 (25 bp)
ACCCGTTTCTGGATGATCAGAATTC
LOC_Os01g27230
Os.27098.2.A1_s_at--523--5851Chr01:15512123..15512147 (25 bp)
GACCAGATGCTCGTGCTACCATGCT
LOC_Os01g27230
Os.27098.2.A1_s_at--111--6351Chr01:15512118..15512142 (25 bp)
GATGCTCGTGCTACCATGCTGGGCA
LOC_Os01g27230
Os.27098.2.A1_s_at--128--9091Chr01:15512110..15512134 (25 bp)
TGCTACCATGCTGGGCACTTGCATG
LOC_Os01g27230
Target Sequence 
GTTCCGGGGCACGTTCATGGTGAACGGTGGGTACGACCGGGANGAAGGNGACAAGGCGGTCGCCGACGGCTACGCCGACC
TGGTGGCGTACGGGCGGNTGTTCNTGGCCAACCCTGACCTNCCGGAGAGGTTCAGGAGGAAGGCAGGTCTGAACAAGTAT
GACAGGAGCACGTTCTATACCTCTGATCCTGTGGTGGGNTACACGGACTACCCGTTTCTGGATGATCAGAATTCAGAACT
AGCAACTCGTTGAGTTCTTCCGTCCCAAAGACCGACCAGATGCTCGTGCTACCATGCTGGGCACTTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27098.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis